# fasta35 -E 0.1 Hoxa9.pep /Projects/data/blastdb/swissprot FASTA searches a protein or DNA sequence data bank version 35.01 May 30, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: Hoxa9.pep 1>>>Hoxa9 homeodomain protein Hox-A9 269 aa - 269 aa Library: /Projects/data/blastdb/swissprot 87558080 residues in 233322 sequences opt E() < 20 545 0:== 22 1 0:= one = represents 400 library sequences 24 2 0:= 26 8 5:* 28 37 53:* 30 184 320:* 32 829 1238:===* 34 2648 3357:======= * 36 6179 6895:================ * 38 11091 11396:============================* 40 16535 15896:=======================================*== 42 20762 19431:================================================*=== 44 23157 21434:=====================================================*==== 46 23960 21831:======================================================*===== 48 21441 20901:====================================================*= 50 19383 19072:===============================================*= 52 16543 16767:=========================================* 54 13493 14322:================================== * 56 11424 11964:=============================* 58 9041 9822:======================= * 60 7249 7956:===================* 62 5881 6379:===============* 64 4725 5073:============* 66 3848 4009:==========* 68 2787 3154:=======* 70 2225 2471:======* 72 1722 1931:====* 74 1402 1506:===* 76 1184 1172:==* 78 910 911:==* 80 606 707:=* 82 488 541:=* 84 399 429:=* 86 337 332:* 88 299 257:* inset = represents 19 library sequences 90 225 199:* 92 158 154:* :========* 94 133 119:* :======* 96 109 92:* :====*= 98 85 71:* :===*= 100 62 55:* :==*= 102 58 43:* :==*= 104 37 33:* :=* 106 46 26:* :=*= 108 30 20:* :=* 110 42 15:* :*== 112 24 12:* :*= 114 25 9:* :*= 116 12 7:* :* 118 27 5:* :*= >120 924 4:*== :*======================================= 87558080 residues in 233322 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6523+/-0.000195; mu= 7.1585+/- 0.011 mean_var=85.9846+/-17.570, 0's: 144 Z-trim: 329 B-trim: 161 in 2/64 Lambda= 0.138313 statistics sampled from 60000 to 232409 sequences Kolmogorov-Smirnov statistic: 0.0189 (N=29) at 50 Algorithm: FASTA (3.5 Sept 2006) [optimized] Parameters: BL50 matrix (15:-5) ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 Scan time: 15.640 The best scores are: opt bits E(233322) gi|14916603|sp|Q9PWD5|HXA9_MORSA Homeobox protein ( 269) 1838 376.0 1.1e-103 gi|6016294|sp|O42506|HXA9A_FUGRU Homeobox protein ( 283) 1103 229.3 1.6e-59 gi|6166219|sp|P31269|HXA9_HUMAN Homeobox protein H ( 272) 907 190.2 9.3e-48 gi|6166220|sp|P09631|HXA9_MOUSE Homeobox protein H ( 271) 898 188.4 3.2e-47 gi|14916598|sp|Q9IA26|HXA9_HETFR Homeobox protein ( 260) 786 166.1 1.7e-40 gi|14916586|sp|Q9IA13|HXD9_HETFR Homeobox protein ( 265) 740 156.9 9.8e-38 gi|21263750|sp|Q9PVR2|HXD9_ORYLA Homeobox protein ( 271) 704 149.7 1.4e-35 gi|119370801|sp|Q1KKS9|HXD9A_FUGRU Homeobox protei ( 273) 698 148.5 3.3e-35 gi|115502399|sp|Q9PWM6|HXD9A_BRARE Homeobox protei ( 262) 679 144.7 4.5e-34 gi|2495322|sp|Q98924|HXA9_CHICK Homeobox protein H ( 169) 674 143.6 6.3e-34 gi|21263749|sp|Q9PVQ9|HXC9_ORYLA Homeobox protein ( 262) 675 143.9 7.8e-34 gi|110282971|sp|Q9YGT5|HXA9B_BRARE Homeobox protei ( 258) 650 138.9 2.4e-32 gi|400010|sp|P09633|HXC9_MOUSE Homeobox protein Ho ( 260) 624 133.7 9e-31 gi|20141537|sp|P31274|HXC9_HUMAN Homeobox protein ( 260) 623 133.5 1e-30 gi|18266775|sp|O42502|HXC9A_FUGRU Homeobox protein ( 261) 597 128.4 3.8e-29 gi|119370775|sp|Q1KKZ3|HXA9B_FUGRU Homeobox protei ( 249) 579 124.7 4.4e-28 gi|114152823|sp|Q9YGS6|HXC9A_BRARE Homeobox protei ( 260) 572 123.4 1.2e-27 gi|1708346|sp|P50209|HXA9_AMBME Homeobox protein H ( 143) 562 121.2 3e-27 gi|110282970|sp|Q9PWL6|HXA9A_BRARE Homeobox protei ( 250) 535 116.0 1.9e-25 gi|1708347|sp|P51783|HXA9_CAVPO Homeobox protein H ( 162) 491 107.1 6e-23 gi|2495326|sp|Q28601|HXC9_SHEEP Homeobox protein H ( 96) 472 103.1 5.6e-22 gi|123287|sp|P28357|HXD9_MOUSE Homeobox protein Ho ( 339) 474 103.9 1.1e-21 gi|400004|sp|P31272|HXB9_XENLA Homeobox protein Ho ( 232) 465 102.0 2.9e-21 gi|110825727|sp|Q9PWM2|HXB9A_BRARE Homeobox protei ( 249) 461 101.2 5.4e-21 gi|123286|sp|P28356|HXD9_HUMAN Homeobox protein Ho ( 342) 455 100.1 1.6e-20 gi|1708355|sp|P20615|HXB9_MOUSE Homeobox protein H ( 250) 447 98.4 3.7e-20 gi|20141507|sp|P17482|HXB9_HUMAN Homeobox protein ( 250) 446 98.2 4.3e-20 gi|119370790|sp|Q1KKY2|HXB9A_FUGRU Homeobox protei ( 255) 429 94.8 4.6e-19 gi|13124743|sp|P31260|HXA10_HUMAN Homeobox protein ( 393) 419 93.0 2.6e-18 gi|114152819|sp|P31310|HXA10_MOUSE Homeobox protei ( 399) 416 92.4 3.9e-18 gi|119370802|sp|Q1KKR7|HXD9B_FUGRU Homeobox protei ( 301) 410 91.1 7.2e-18 gi|119370777|sp|Q1KKZ4|HXAAB_FUGRU Homeobox protei ( 331) 402 89.5 2.3e-17 gi|119370803|sp|Q1KKT0|HXDAA_FUGRU Homeobox protei ( 336) 402 89.5 2.4e-17 gi|20141612|sp|Q9NYD6|HXC10_HUMAN Homeobox protein ( 342) 397 88.5 4.8e-17 gi|400011|sp|P31257|HXC10_MOUSE Homeobox protein H ( 342) 397 88.5 4.8e-17 gi|123289|sp|P28358|HXD10_HUMAN Homeobox protein H ( 340) 396 88.3 5.5e-17 gi|114152824|sp|P28359|HXD10_MOUSE Homeobox protei ( 340) 395 88.1 6.3e-17 gi|14916587|sp|Q9IA14|HXD10_HETFR Homeobox protein ( 336) 394 87.9 7.2e-17 gi|115502400|sp|Q90469|HXDAA_BRARE Homeobox protei ( 343) 394 87.9 7.3e-17 gi|14916604|sp|Q9PWD6|HXA10_MORSA Homeobox protein ( 289) 388 86.7 1.5e-16 gi|123321|sp|P10179|HMB4_TRIGR Homeobox protein HB ( 107) 381 85.0 1.8e-16 gi|14916599|sp|Q9IA27|HXA10_HETFR Homeobox protein ( 271) 385 86.1 2.1e-16 gi|60392422|sp|Q9PWL7|HXBAA_BRARE Homeobox protein ( 85) 378 84.3 2.2e-16 gi|400019|sp|P24341|HXD10_CHICK Homeobox protein H ( 95) 377 84.1 2.8e-16 gi|119370776|sp|Q1KL16|HXAAA_FUGRU Homeobox protei ( 287) 378 84.7 5.8e-16 gi|60392410|sp|Q8AWY2|HXAAB_BRARE Homeobox protein ( 330) 376 84.3 8.5e-16 gi|119370794|sp|Q1KKV1|HXCAA_FUGRU Homeobox protei ( 346) 375 84.1 1e-15 gi|123285|sp|P24340|HXD9_CHICK Homeobox protein Ho ( 60) 364 81.4 1.2e-15 gi|60392418|sp|Q9DDU1|HXABB_BRARE Homeobox protein ( 283) 363 81.7 4.6e-15 gi|12644203|sp|P31277|HXD11_HUMAN Homeobox protein ( 338) 352 79.5 2.4e-14 gi|60392419|sp|Q9DDU2|HXABB_DANAE Homeobox protein ( 283) 348 78.7 3.6e-14 gi|60392417|sp|Q9DDU0|HXABA_BRARE Homeobox protein ( 284) 340 77.1 1.1e-13 gi|14916588|sp|Q9IA15|HXD11_HETFR Homeobox protein ( 265) 339 76.9 1.2e-13 gi|399992|sp|P31258|HXA11_CHICK Homeobox protein H ( 297) 339 76.9 1.3e-13 gi|14916595|sp|Q9IA23|HXA5_HETFR Homeobox protein ( 275) 338 76.7 1.4e-13 gi|119370804|sp|Q1KKT1|HXDBA_FUGRU Homeobox protei ( 265) 336 76.3 1.8e-13 gi|119370795|sp|Q1KKV2|HXCBA_FUGRU Homeobox protei ( 322) 337 76.5 1.8e-13 gi|123292|sp|P23813|HXD11_MOUSE Homeobox protein H ( 323) 335 76.1 2.4e-13 gi|13124744|sp|P31270|HXA11_HUMAN Homeobox protein ( 313) 333 75.7 3.1e-13 gi|119370779|sp|Q1KKZ5|HXABB_FUGRU Homeobox protei ( 284) 332 75.5 3.3e-13 gi|1708350|sp|P31311|HXA11_MOUSE Homeobox protein ( 313) 331 75.3 4.1e-13 gi|417310|sp|P32443|MEOX2_MOUSE Homeobox protein M ( 303) 330 75.1 4.6e-13 gi|115502401|sp|Q90470|HXDBA_BRARE Homeobox protei ( 276) 329 74.9 4.9e-13 gi|60392398|sp|Q6B3N0|HXA5_CHICK Homeobox protein ( 270) 328 74.7 5.6e-13 gi|400020|sp|P24342|HXD11_CHICK Homeobox protein H ( 280) 327 74.5 6.6e-13 gi|114152826|sp|P10628|HXD4_MOUSE Homeobox protein ( 250) 325 74.1 7.9e-13 gi|119370778|sp|Q1KL17|HXABA_FUGRU Homeobox protei ( 283) 324 73.9 1e-12 gi|730046|sp|P39020|MEOX2_RAT Homeobox protein MOX ( 303) 323 73.7 1.2e-12 gi|93141286|sp|P50222|MEOX2_HUMAN Homeobox protein ( 304) 322 73.5 1.4e-12 gi|3287858|sp|O43248|HXC11_HUMAN Homeobox protein ( 304) 321 73.3 1.6e-12 gi|3023938|sp|Q91771|HXB7A_XENLA Homeobox protein ( 220) 319 72.8 1.6e-12 gi|60392414|sp|Q8JH55|HXB8B_BRARE Homeobox protein ( 247) 318 72.7 2.1e-12 gi|123255|sp|P09629|HXB7_HUMAN Homeobox protein Ho ( 217) 317 72.4 2.1e-12 gi|116242514|sp|Q00056|HXA4_HUMAN Homeobox protein ( 320) 319 72.9 2.2e-12 gi|123226|sp|P09021|HXA5_MOUSE Homeobox protein Ho ( 270) 318 72.7 2.2e-12 gi|18203484|sp|Q9TT89|HXB7_BOVIN Homeobox protein ( 217) 316 72.2 2.5e-12 gi|400022|sp|P31263|HXD11_NOTVI Homeobox protein H ( 277) 317 72.5 2.6e-12 gi|122065215|sp|P31313|HXC11_MOUSE Homeobox protei ( 304) 317 72.5 2.8e-12 gi|82230194|sp|Q58EL0|HXCBA_BRARE Homeobox protein ( 306) 317 72.5 2.8e-12 gi|110279014|sp|Q2HJ67|HXA5_BOVIN Homeobox protein ( 270) 316 72.3 2.9e-12 gi|110282969|sp|Q9YGT6|HXA5A_BRARE Homeobox protei ( 265) 315 72.1 3.3e-12 gi|83303676|sp|P18864|HXB7_RAT Homeobox protein Ho ( 219) 312 71.4 4.3e-12 gi|20141491|sp|P09016|HXD4_HUMAN Homeobox protein ( 255) 312 71.5 4.9e-12 gi|114152821|sp|P09024|HXB7_MOUSE Homeobox protein ( 217) 308 70.6 7.5e-12 gi|123274|sp|P04476|HXB7B_XENLA Homeobox protein H ( 220) 308 70.6 7.5e-12 gi|17378385|sp|P31267|HXA6_HUMAN Homeobox protein ( 233) 306 70.3 1e-11 gi|123275|sp|P09025|HXC8_MOUSE Homeobox protein Ho ( 242) 306 70.3 1.1e-11 gi|13124745|sp|P31273|HXC8_HUMAN Homeobox protein ( 242) 306 70.3 1.1e-11 gi|82234789|sp|Q68EH7|HXC8A_BRARE Homeobox protein ( 250) 305 70.1 1.3e-11 gi|1708345|sp|P52949|HXA5_RAT Homeobox protein Hox ( 233) 304 69.9 1.4e-11 gi|60392412|sp|Q8AWZ0|HXB8A_BRARE Homeobox protein ( 245) 303 69.7 1.6e-11 gi|123298|sp|P17278|HXD4_CHICK Homeobox protein Ho ( 235) 302 69.5 1.8e-11 gi|119370789|sp|Q1KKY1|HXB8A_FUGRU Homeobox protei ( 282) 303 69.7 1.8e-11 gi|123259|sp|P09632|HXB8_MOUSE Homeobox protein Ho ( 243) 302 69.5 1.9e-11 gi|20141506|sp|P17481|HXB8_HUMAN Homeobox protein ( 243) 302 69.5 1.9e-11 gi|52788238|sp|P20719|HXA5_HUMAN Homeobox protein ( 270) 302 69.5 2e-11 gi|2506527|sp|P13545|HMB1_STRPU Homeobox protein H ( 308) 302 69.5 2.2e-11 gi|1708356|sp|P09074|HXC5A_BRARE Homeobox protein ( 232) 300 69.1 2.4e-11 gi|400018|sp|P23463|HXD8_MOUSE Homeobox protein Ho ( 289) 301 69.3 2.5e-11 gi|1171000|sp|P39021|MEOX2_XENLA Homeobox protein ( 298) 300 69.1 2.9e-11 gi|1708231|sp|P09087|ABDB_DROME Homeobox protein a ( 493) 302 69.7 3.2e-11 gi|232262|sp|Q00444|HXC5_HUMAN Homeobox protein Ho ( 222) 297 68.4 3.5e-11 gi|123250|sp|P15861|HXB6A_BRARE Homeobox protein H ( 228) 296 68.2 4.1e-11 gi|13124737|sp|P13378|HXD8_HUMAN Homeobox protein ( 290) 297 68.5 4.3e-11 gi|585281|sp|Q08624|HXC4_MOUSE Homeobox protein Ho ( 264) 296 68.3 4.6e-11 gi|14916601|sp|Q9PWD3|HXA5_MORSA Homeobox protein ( 281) 296 68.3 4.8e-11 gi|60392437|sp|Q9YH13|HXC8_CHICK Homeobox protein ( 242) 295 68.1 4.9e-11 gi|60392397|sp|Q5YLH5|HXA6_CHICK Homeobox protein ( 231) 294 67.9 5.4e-11 gi|20141492|sp|P09092|HXA6_MOUSE Homeobox protein ( 232) 294 67.9 5.5e-11 gi|3122244|sp|P81192|HXA4_LINSA Homeobox protein H ( 80) 287 66.1 6.2e-11 gi|123271|sp|P14653|HXB1_HUMAN Homeobox protein Ho ( 301) 294 67.9 6.7e-11 gi|119370792|sp|Q1KKU6|HXC4A_FUGRU Homeobox protei ( 264) 293 67.7 6.9e-11 gi|114152820|sp|P09079|HXB5_MOUSE Homeobox protein ( 269) 293 67.7 7e-11 gi|14916591|sp|Q9IA19|HXA1_HETFR Homeobox protein ( 326) 294 68.0 7.1e-11 gi|3915721|sp|P31268|HXA7_HUMAN Homeobox protein H ( 230) 292 67.5 7.1e-11 gi|123281|sp|P09071|HXA7_XENLA Homeobox protein Ho ( 209) 291 67.2 7.6e-11 gi|123319|sp|P09080|HMB1_TRIGR Homeobox protein HB ( 307) 293 67.7 7.8e-11 gi|123279|sp|P09017|HXC4_HUMAN Homeobox protein Ho ( 264) 291 67.3 9.1e-11 gi|60392411|sp|Q8AWY9|HXB7A_BRARE Homeobox protein ( 227) 290 67.1 9.3e-11 gi|119370774|sp|Q1KL14|HXA5A_FUGRU Homeobox protei ( 274) 291 67.3 9.4e-11 gi|12644227|sp|P35452|HXD12_HUMAN Homeobox protein ( 275) 291 67.3 9.4e-11 gi|21263751|sp|Q9PVS4|HXC4_ORYLA Homeobox protein ( 261) 289 66.9 1.2e-10 gi|48428932|sp|P83949|UBX_DROME Homeotic protein u ( 389) 291 67.4 1.2e-10 gi|14916600|sp|Q9PWD2|HXA4_MORSA Homeobox protein ( 248) 288 66.7 1.3e-10 gi|116242515|sp|P17509|HXB6_HUMAN Homeobox protein ( 224) 287 66.4 1.4e-10 gi|123353|sp|P09022|HXA1_MOUSE Homeobox protein Ho ( 331) 289 67.0 1.4e-10 gi|123283|sp|P23459|HXD8_CHICK Homeobox protein Ho ( 188) 285 66.0 1.6e-10 gi|1346331|sp|P02830|HXA7_MOUSE Homeobox protein H ( 229) 286 66.3 1.6e-10 gi|14916585|sp|Q9IA12|HXD8_HETFR Homeobox protein ( 240) 286 66.3 1.7e-10 gi|119370772|sp|Q1KL12|HXA3A_FUGRU Homeobox protei ( 417) 289 67.0 1.7e-10 gi|3123219|sp|P18866|HXC8_RAT Homeobox protein Hox ( 108) 281 65.0 1.8e-10 gi|114152822|sp|P32043|HXC5_MOUSE Homeobox protein ( 222) 285 66.0 1.8e-10 gi|119370773|sp|Q1KL13|HXA4A_FUGRU Homeobox protei ( 255) 285 66.1 2e-10 gi|6166218|sp|P06798|HXA4_MOUSE Homeobox protein H ( 285) 285 66.1 2.2e-10 gi|119364594|sp|O13074|HXB4A_FUGRU Homeobox protei ( 288) 285 66.1 2.2e-10 gi|123266|sp|P10284|HXB4_MOUSE Homeobox protein Ho ( 250) 284 65.9 2.3e-10 gi|34395628|sp|Q24645|ANTP_DROSU Homeotic protein ( 394) 286 66.4 2.5e-10 gi|6016290|sp|O08656|HXA1_RAT Homeobox protein Hox ( 333) 285 66.2 2.5e-10 gi|400003|sp|P18863|HXB8_RAT Homeobox protein Hox- ( 92) 277 64.2 2.8e-10 gi|123253|sp|P09023|HXB6_MOUSE Homeobox protein Ho ( 224) 282 65.5 2.8e-10 gi|60392424|sp|Q9YGT4|HXB6B_BRARE Homeobox protein ( 224) 282 65.5 2.8e-10 gi|14916597|sp|Q9IA25|HXA7_HETFR Homeobox protein ( 208) 281 65.2 3e-10 gi|6166216|sp|P49639|HXA1_HUMAN Homeobox protein H ( 335) 283 65.8 3.3e-10 gi|123317|sp|P02833|ANTP_DROME Homeotic protein an ( 378) 283 65.8 3.7e-10 gi|119370785|sp|Q1KKX9|HXB5A_FUGRU Homeobox protei ( 319) 282 65.6 3.7e-10 gi|14916602|sp|Q9PWD4|HXA7_MORSA Homeobox protein ( 225) 280 65.1 3.7e-10 gi|400000|sp|P09067|HXB5_HUMAN Homeobox protein Ho ( 269) 280 65.1 4.2e-10 gi|6016229|sp|Q07961|ABDA_TRICA Homeobox protein a ( 343) 281 65.4 4.5e-10 gi|60392400|sp|Q90VZ9|HXA7_CHICK Homeobox protein ( 219) 278 64.6 4.8e-10 gi|462537|sp|P34684|LIN39_CAEEL Homeobox protein l ( 253) 278 64.7 5.3e-10 gi|119370787|sp|Q1KKY0|HXB6A_FUGRU Homeobox protei ( 274) 278 64.7 5.7e-10 gi|123241|sp|P24061|HXA7_COTJA Homeobox protein Ho ( 242) 277 64.5 5.9e-10 gi|6166222|sp|P31249|HXD3_HUMAN Homeobox protein H ( 416) 280 65.2 6e-10 gi|68067436|sp|P09077|SCR_DROME Homeotic protein S ( 417) 280 65.2 6e-10 gi|2495321|sp|Q28600|HXA7_SHEEP Homeobox protein H ( 71) 269 62.5 6.9e-10 gi|60392406|sp|P09014|HXB5A_BRARE Homeobox protein ( 275) 276 64.3 7.5e-10 gi|1708352|sp|P23682|HXB3_CHICK Homeobox protein H ( 399) 278 64.8 7.6e-10 gi|123251|sp|P14839|HXB6_CHICK Homeobox protein Ho ( 84) 269 62.5 7.8e-10 gi|60392404|sp|O42368|HXB3A_BRARE Homeobox protein ( 417) 278 64.8 7.9e-10 gi|60392407|sp|P22574|HXB4A_BRARE Homeobox protein ( 246) 275 64.1 7.9e-10 gi|14916594|sp|Q9IA22|HXA4_HETFR Homeobox protein ( 247) 275 64.1 7.9e-10 gi|547692|sp|P17483|HXB4_HUMAN Homeobox protein Ho ( 251) 275 64.1 8e-10 gi|119370771|sp|Q1KKZ2|HXA2B_FUGRU Homeobox protei ( 300) 276 64.3 8e-10 gi|60392401|sp|O42365|HXA2B_BRARE Homeobox protein ( 363) 277 64.6 8.1e-10 gi|123243|sp|P02832|HXC6_XENLA Homeobox protein Ho ( 234) 274 63.9 8.7e-10 gi|20141538|sp|P31275|HXC12_HUMAN Homeobox protein ( 282) 275 64.1 8.8e-10 gi|45476767|sp|Q9QZW9|HLXB9_MOUSE Homeobox protein ( 404) 277 64.6 8.8e-10 gi|123228|sp|P17277|HXA4_CHICK Homeobox protein Ho ( 309) 275 64.2 9.4e-10 gi|123294|sp|P23812|HXD12_MOUSE Homeobox protein H ( 279) 274 63.9 1e-09 gi|60392444|sp|Q9PWM3|HXC4A_BRARE Homeobox protein ( 268) 273 63.7 1.1e-09 gi|119370769|sp|Q1KL10|HXA1A_FUGRU Homeobox protei ( 325) 274 64.0 1.1e-09 gi|81866873|sp|Q8K5B8|HXC12_MOUSE Homeobox protein ( 280) 273 63.7 1.2e-09 gi|68067431|sp|P07548|DFD_DROME Homeotic protein d ( 586) 277 64.8 1.2e-09 gi|119370793|sp|Q1KKU7|HXC5A_FUGRU Homeobox protei ( 205) 271 63.2 1.2e-09 gi|123264|sp|P14840|HXB4_CHICK Homeobox protein Ho ( 245) 272 63.5 1.2e-09 gi|123303|sp|P15859|SCR_APIME Homeobox protein H55 ( 86) 266 62.0 1.2e-09 gi|14916584|sp|Q9IA11|HXD5_HETFR Homeobox protein ( 252) 272 63.5 1.2e-09 gi|110825726|sp|Q90423|HXB1B_BRARE Homeobox protei ( 307) 273 63.8 1.2e-09 gi|119370786|sp|Q1KKX0|HXB5B_FUGRU Homeobox protei ( 280) 272 63.5 1.3e-09 gi|110282968|sp|Q9PWL5|HXA4A_BRARE Homeobox protei ( 245) 271 63.3 1.4e-09 gi|123246|sp|P14838|HXB5_CHICK Homeobox protein Ho ( 82) 264 61.5 1.5e-09 gi|123315|sp|P15860|HM90_APIME Homeobox protein H9 ( 74) 263 61.3 1.6e-09 gi|399997|sp|P31259|HXB1_CHICK Homeobox protein Ho ( 309) 271 63.4 1.6e-09 gi|14916596|sp|Q9IA24|HXA6_HETFR Homeobox protein ( 229) 269 62.9 1.7e-09 gi|3023467|sp|O14627|CDX4_HUMAN Homeobox protein C ( 284) 270 63.1 1.8e-09 gi|123424|sp|P09636|HMSA_SALSA Homeobox protein S1 ( 75) 262 61.1 1.9e-09 gi|1708358|sp|P49925|HXC6_SHEEP Homeobox protein H ( 153) 266 62.1 1.9e-09 gi|123297|sp|P09019|HXB5_XENLA Homeobox protein Ho ( 230) 268 62.7 2e-09 gi|123238|sp|P09070|HXB4_XENLA Homeobox protein Ho ( 232) 268 62.7 2e-09 gi|119370788|sp|Q1KKX1|HXB6B_FUGRU Homeobox protei ( 233) 268 62.7 2e-09 gi|123272|sp|P17919|HXB1_MOUSE Homeobox protein Ho ( 297) 269 62.9 2.1e-09 gi|399984|sp|P31261|HXA2_NOTVI Homeobox protein Ho ( 90) 262 61.2 2.2e-09 gi|60392402|sp|O42366|HXB1A_BRARE Homeobox protein ( 311) 269 63.0 2.2e-09 gi|1708360|sp|P09027|HXD3_MOUSE Homeobox protein H ( 417) 270 63.3 2.4e-09 gi|114149319|sp|P0C1T1|HXB2_MOUSE Homeobox protein ( 354) 269 63.0 2.4e-09 gi|1708344|sp|P50208|HXA5_AMBME Homeobox protein H ( 148) 264 61.7 2.4e-09 gi|232264|sp|P29552|ABDA_AEDAE Homeobox protein ab ( 74) 260 60.7 2.5e-09 gi|60392403|sp|O42367|HXB2A_BRARE Homeobox protein ( 390) 269 63.0 2.6e-09 gi|400007|sp|P10629|HXC6_MOUSE Homeobox protein Ho ( 235) 266 62.3 2.6e-09 gi|2495331|sp|Q05007|ABDA_ARTSF Homeobox protein a ( 139) 263 61.5 2.7e-09 gi|60392413|sp|Q8AWZ2|HXA3A_BRARE Homeobox protein ( 410) 269 63.0 2.7e-09 gi|399999|sp|P31247|HXB3_XENLA Homeobox protein Ho ( 60) 258 60.2 2.8e-09 gi|123270|sp|P14652|HXB2_HUMAN Homeobox protein Ho ( 356) 268 62.8 2.8e-09 gi|123304|sp|P09020|HXC5_XENLA Homeobox protein Ho ( 87) 260 60.8 2.8e-09 gi|6016292|sp|O43364|HXA2_HUMAN Homeobox protein H ( 376) 268 62.8 2.9e-09 gi|1170311|sp|P14837|HM8_XENLA Homeobox protein 8 ( 271) 266 62.3 3e-09 gi|82227627|sp|O42503|HXC8A_FUGRU Homeobox protein ( 392) 268 62.8 3e-09 gi|60392405|sp|P09013|HXB5B_BRARE Homeobox protein ( 276) 266 62.3 3e-09 gi|2495329|sp|Q26430|ABDA_MANSE Homeobox protein a ( 97) 260 60.8 3e-09 gi|119370798|sp|Q1KKS7|HXD3A_FUGRU Homeobox protei ( 408) 268 62.8 3.1e-09 gi|119370784|sp|Q1KKX7|HXB3A_FUGRU Homeobox protei ( 474) 268 62.9 3.5e-09 gi|82227628|sp|O42504|HXC6A_FUGRU Homeobox protein ( 236) 264 61.9 3.5e-09 gi|14916593|sp|Q9IA21|HXA3_HETFR Homeobox protein ( 410) 267 62.6 3.6e-09 gi|82236744|sp|Q6IEI0|HXB2A_FUGRU Homeobox protein ( 415) 267 62.7 3.6e-09 gi|123220|sp|P09634|HXA7_RAT Homeobox protein Hox- ( 105) 259 60.6 3.7e-09 gi|1708286|sp|P50901|HOX3_BRAFL Homeobox protein H ( 411) 266 62.4 4.1e-09 gi|123268|sp|P14651|HXB3_HUMAN Homeobox protein Ho ( 431) 266 62.5 4.3e-09 gi|1709078|sp|P50221|MEOX1_HUMAN Homeobox protein ( 254) 263 61.7 4.3e-09 gi|1708353|sp|P09026|HXB3_MOUSE Homeobox protein H ( 433) 266 62.5 4.3e-09 gi|123231|sp|P15856|ABDA_APIME Homeobox protein ab ( 74) 256 59.9 4.3e-09 gi|585280|sp|Q08727|HXA2_CHICK Homeobox protein Ho ( 375) 265 62.2 4.4e-09 gi|232266|sp|P29556|ABDA_SCHGR Homeobox protein ab ( 157) 260 60.9 4.4e-09 gi|2495288|sp|P70118|IPF1_MESAU Insulin promoter f ( 283) 263 61.7 4.6e-09 gi|1708542|sp|P52947|IPF1_RAT Insulin promoter fac ( 283) 263 61.7 4.6e-09 gi|1708540|sp|P52945|IPF1_HUMAN Insulin promoter f ( 283) 263 61.7 4.6e-09 gi|1708541|sp|P52946|IPF1_MOUSE Insulin promoter f ( 284) 263 61.7 4.6e-09 gi|119370781|sp|Q1KKZ6|HXADB_FUGRU Homeobox protei ( 285) 263 61.7 4.7e-09 gi|60392399|sp|Q7T3J5|HXA3_CHICK Homeobox protein ( 413) 265 62.3 4.7e-09 gi|26006977|sp|P10105|LAB_DROME Homeotic protein l ( 635) 267 62.8 5e-09 gi|82217505|sp|Q91622|CDX1_XENLA Homeobox protein ( 263) 262 61.5 5e-09 gi|14916589|sp|Q9IA16|HXD12_HETFR Homeobox protein ( 272) 262 61.5 5.2e-09 gi|119370799|sp|Q1KKS8|HXD4A_FUGRU Homeobox protei ( 233) 261 61.3 5.2e-09 gi|6166223|sp|O57374|HXD4A_BRARE Homeobox protein ( 236) 261 61.3 5.3e-09 gi|6016301|sp|O93353|HXD3_CHICK Homeobox protein H ( 413) 264 62.1 5.4e-09 gi|400006|sp|P31262|HXC5_NOTVI Homeobox protein Ho ( 71) 254 59.5 5.5e-09 gi|6016293|sp|O43365|HXA3_HUMAN Homeobox protein H ( 443) 264 62.1 5.7e-09 gi|2811092|sp|P02831|HXA3_MOUSE Homeobox protein H ( 443) 264 62.1 5.7e-09 gi|729652|sp|P28174|HXC3A_BRARE Homeobox protein H ( 250) 260 61.1 6.4e-09 gi|547655|sp|Q01622|HLOX2_HELRO Homeobox protein L ( 429) 263 61.9 6.4e-09 gi|417309|sp|P32442|MEOX1_MOUSE Homeobox protein M ( 253) 260 61.1 6.4e-09 gi|60392443|sp|Q98SH9|HXC1A_BRARE Homeobox protein ( 302) 260 61.2 7.4e-09 gi|14916592|sp|Q9IA20|HXA2_HETFR Homeobox protein ( 363) 261 61.4 7.4e-09 gi|123425|sp|P09637|HXA5_SALSA Homeobox protein Ho ( 78) 252 59.1 7.7e-09 gi|60392438|sp|P15862|HXC6A_BRARE Homeobox protein ( 231) 258 60.7 7.9e-09 gi|45644931|sp|P50219|HLXB9_HUMAN Homeobox protein ( 403) 261 61.4 8.1e-09 gi|21264452|sp|P10038|MAB5_CAEEL Homeobox protein ( 200) 257 60.4 8.1e-09 gi|123390|sp|P21523|HLOX2_HIRME Homeobox protein L ( 118) 254 59.7 8.1e-09 gi|119370770|sp|Q1KL11|HXA2A_FUGRU Homeobox protei ( 363) 260 61.2 8.5e-09 gi|399983|sp|P31245|HXA2_MOUSE Homeobox protein Ho ( 372) 260 61.2 8.7e-09 gi|399985|sp|P31246|HXA2_RAT Homeobox protein Hox- ( 372) 260 61.2 8.7e-09 gi|123423|sp|P09638|HXB2_SALSA Homeobox protein Ho ( 60) 249 58.5 9.6e-09 gi|17378648|sp|Q9GZZ0|HXD1_HUMAN Homeobox protein ( 328) 258 60.8 1e-08 gi|123418|sp|P18867|HXD3_RAT Homeobox protein Hox- ( 114) 252 59.3 1e-08 gi|729725|sp|Q07424|CDX4_MOUSE Homeobox protein CD ( 282) 257 60.5 1.1e-08 gi|25453437|sp|P02835|FTZ_DROME Segmentation prote ( 410) 258 60.9 1.2e-08 gi|1708230|sp|P29555|ABDA_DROME Homeobox protein a ( 590) 260 61.4 1.2e-08 gi|1346304|sp|P48590|FTZ_DROHY Segmentation protei ( 456) 258 60.9 1.3e-08 gi|123242|sp|P14858|HXC6_NOTVI Homeobox protein Ho ( 234) 254 59.9 1.4e-08 gi|399996|sp|P31357|HXB1_AMBME Homeobox protein Ho ( 184) 252 59.4 1.5e-08 gi|2495318|sp|Q08821|HXA1_XENLA Homeobox protein H ( 240) 253 59.7 1.6e-08 gi|119370800|sp|Q1KKR6|HXD4B_FUGRU Homeobox protei ( 249) 253 59.7 1.7e-08 gi|47115878|sp|Q8T940|UBX_JUNCO Homeotic protein u ( 253) 253 59.7 1.7e-08 gi|119370806|sp|Q1KKT2|HXDCA_FUGRU Homeobox protei ( 261) 253 59.7 1.7e-08 gi|115502402|sp|Q90471|HXDCA_BRARE Homeobox protei ( 262) 253 59.7 1.7e-08 gi|2495323|sp|Q90346|HXB1_CYPCA Homeobox protein H ( 315) 254 60.0 1.7e-08 gi|60392445|sp|Q9PWM5|HXC6B_BRARE Homeobox protein ( 227) 252 59.5 1.8e-08 gi|4033408|sp|Q62424|HXA13_MOUSE Homeobox protein ( 386) 255 60.2 1.8e-08 gi|119370782|sp|Q1KKX5|HXB1A_FUGRU Homeobox protei ( 391) 255 60.2 1.8e-08 gi|119370796|sp|Q1KKV3|HXCCA_FUGRU Homeobox protei ( 275) 253 59.7 1.8e-08 gi|2495319|sp|Q28598|HXA4_SHEEP Homeobox protein H ( 87) 245 57.8 2.2e-08 gi|123320|sp|P10178|HMB3_TRIGR Homeobox protein HB ( 108) 246 58.0 2.3e-08 gi|6094304|sp|Q26600|SMOX1_SCHMA Homeobox protein ( 280) 251 59.3 2.4e-08 gi|400023|sp|P24343|HXD12_CHICK Homeobox protein H ( 266) 249 58.9 3.1e-08 gi|123316|sp|P17138|HMA2_HELTR Homeobox protein HT ( 60) 240 56.7 3.3e-08 gi|68845291|sp|P09090|ZEN2_DROME Protein zerknuell ( 252) 248 58.7 3.4e-08 gi|123416|sp|P18865|HXC4_RAT Homeobox protein Hox- ( 76) 241 56.9 3.5e-08 gi|66773957|sp|Q5EU40|HXD12_CARPS Homeobox protein ( 270) 248 58.7 3.6e-08 gi|60392448|sp|Q9YGT0|HXCCB_BRARE Homeobox protein ( 283) 248 58.7 3.7e-08 gi|1708054|sp|P31315|GSHI_MOUSE Homeobox protein G ( 261) 246 58.3 4.6e-08 gi|82217132|sp|Q90X89|CDX1_XENTR Homeobox protein ( 262) 246 58.3 4.6e-08 gi|32470599|sp|P31264|HMPB_DROME Homeotic protein ( 782) 251 59.7 5.4e-08 gi|119370783|sp|Q1KKW8|HXB1B_FUGRU Homeobox protei ( 280) 244 57.9 6.4e-08 gi|114149320|sp|Q1ECY2|HXBDA_BRARE Homeobox protei ( 303) 244 58.0 6.8e-08 gi|1708055|sp|P31316|GSH2_MOUSE Homeobox protein G ( 305) 244 58.0 6.8e-08 gi|1708351|sp|P50210|HXA13_AMBME Homeobox protein ( 107) 237 56.2 7.9e-08 gi|27923786|sp|Q9H4S2|GSHI_HUMAN Homeobox protein ( 264) 242 57.5 8e-08 gi|232263|sp|Q01822|HXD1_MOUSE Homeobox protein Ho ( 327) 243 57.8 8.2e-08 gi|6166174|sp|Q91907|GBX2_XENLA Homeobox protein G ( 340) 242 57.6 9.8e-08 gi|119370791|sp|Q1KKY3|HXBDA_FUGRU Homeobox protei ( 320) 241 57.4 1.1e-07 gi|2495320|sp|Q28599|HXA5_SHEEP Homeobox protein H ( 49) 230 54.6 1.1e-07 gi|27923816|sp|Q9EQM3|NKX24_MOUSE Homeobox protein ( 354) 241 57.4 1.2e-07 gi|20138327|sp|Q9BZM3|GSH2_HUMAN Homeobox protein ( 304) 240 57.2 1.2e-07 gi|60392416|sp|Q98SI1|HXA1A_BRARE Homeobox protein ( 329) 240 57.2 1.3e-07 gi|2495327|sp|Q08820|HXD1_XENLA Homeobox protein H ( 300) 239 57.0 1.3e-07 gi|3121834|sp|P81193|CDX_LINSA Homeobox protein CD ( 70) 230 54.7 1.5e-07 gi|116242513|sp|P31271|HXA13_HUMAN Homeobox protei ( 388) 239 57.0 1.6e-07 gi|12644308|sp|P52951|GBX2_HUMAN Homeobox protein ( 348) 238 56.8 1.7e-07 gi|67476449|sp|P09085|CAD_DROME Homeotic protein c ( 427) 239 57.1 1.8e-07 gi|110282972|sp|Q6W990|HXADA_BRARE Homeobox protei ( 310) 236 56.4 2.1e-07 gi|60392440|sp|Q6JIY5|HXCDA_BRARE Homeobox protein ( 306) 235 56.2 2.4e-07 gi|119370797|sp|Q1KKV4|HXCDA_FUGRU Homeobox protei ( 306) 235 56.2 2.4e-07 gi|110282973|sp|P79724|HXADB_BRARE Homeobox protei ( 289) 234 56.0 2.6e-07 gi|20138643|sp|Q90X25|HXA13_CHICK Homeobox protein ( 290) 234 56.0 2.6e-07 gi|116241291|sp|P47902|CDX1_HUMAN Homeobox protein ( 265) 233 55.7 2.8e-07 gi|60392439|sp|Q6JIY4|HXCDB_BRARE Homeobox protein ( 273) 233 55.7 2.9e-07 gi|123240|sp|P13544|HM1_CHICK Homeobox protein CHO ( 67) 225 53.7 2.9e-07 gi|1170313|sp|P18111|CDX1_MOUSE Homeobox protein C ( 268) 232 55.5 3.2e-07 gi|6226632|sp|P17488|HM13_CAEEL Homeobox protein c ( 202) 230 55.0 3.4e-07 gi|21903413|sp|P17487|HM12_CAEEL Homeobox protein ( 180) 229 54.8 3.6e-07 gi|14286139|sp|P10181|ROUGH_DROME Homeobox protein ( 350) 232 55.6 4e-07 gi|547649|sp|Q04649|CDX2_MESAU Homeobox protein CD ( 313) 231 55.4 4.2e-07 gi|14916590|sp|Q9IA17|HXD13_HETFR Homeobox protein ( 284) 230 55.1 4.5e-07 gi|547690|sp|Q04281|HOX71_XENLA Homeobox protein X ( 295) 230 55.2 4.6e-07 gi|1170316|sp|P46692|HMD1_CHICK Homeobox protein C ( 248) 229 54.9 4.6e-07 gi|116243034|sp|Q9DEB6|CDX1_CHICK Homeobox protein ( 260) 229 54.9 4.8e-07 gi|2495284|sp|P70354|MSX3_MOUSE Homeobox protein M ( 204) 227 54.4 5.2e-07 gi|1705740|sp|Q05095|CDX1_RAT Homeobox protein CDX ( 123) 224 53.7 5.3e-07 gi|119370780|sp|Q1KL22|HXADA_FUGRU Homeobox protei ( 302) 229 55.0 5.4e-07 gi|2495286|sp|Q24648|ZEN_DROSU Protein zerknuellt ( 373) 230 55.2 5.5e-07 gi|1351127|sp|P48031|GBX2_MOUSE Homeobox protein G ( 348) 229 55.0 6e-07 gi|123260|sp|P09078|HXB8_PIG Homeobox protein Hox- ( 93) 221 53.0 6.5e-07 gi|20141569|sp|P50207|HXC13_MOUSE Homeobox protein ( 328) 228 54.8 6.6e-07 gi|2506529|sp|Q07687|DLX2_HUMAN Homeobox protein D ( 328) 228 54.8 6.6e-07 gi|20141539|sp|P31276|HXC13_HUMAN Homeobox protein ( 330) 228 54.8 6.6e-07 gi|20141282|sp|Q99626|CDX2_HUMAN Homeobox protein ( 313) 227 54.6 7.3e-07 gi|42559526|sp|Q9GK08|MSX2_CANFA Homeobox protein ( 267) 226 54.3 7.4e-07 gi|123309|sp|P23410|MSX2_COTJA Homeobox protein MS ( 259) 224 53.9 9.5e-07 gi|1170314|sp|P43241|CDX2_MOUSE Homeobox protein C ( 311) 225 54.2 9.6e-07 gi|1170443|sp|P24344|HXD13_CHICK Homeobox protein ( 301) 223 53.8 1.2e-06 gi|1170325|sp|P28362|MSX2_CHICK Homeobox protein M ( 259) 222 53.5 1.3e-06 gi|66773958|sp|Q5EU41|HXD13_CARPS Homeobox protein ( 333) 223 53.8 1.3e-06 gi|2851475|sp|P35453|HXD13_HUMAN Homeobox protein ( 335) 223 53.8 1.3e-06 gi|114152825|sp|P70217|HXD13_MOUSE Homeobox protei ( 339) 223 53.8 1.3e-06 gi|50403792|sp|Q92826|HXB13_HUMAN Homeobox protein ( 284) 221 53.4 1.5e-06 gi|2495325|sp|P70321|HXB13_MOUSE Homeobox protein ( 286) 221 53.4 1.6e-06 gi|123432|sp|P09089|ZEN1_DROME Protein zerknuellt ( 353) 222 53.6 1.6e-06 gi|464340|sp|P34766|PAL1_CAEEL Homeobox protein pa ( 208) 219 52.9 1.6e-06 gi|29336920|sp|Q9BZE3|BARH1_HUMAN BarH-like 1 home ( 327) 221 53.4 1.7e-06 gi|51338785|sp|P56407|HM09_CAEEL Homeobox protein ( 147) 215 51.9 2.1e-06 gi|115502392|sp|Q14549|GBX1_HUMAN Homeobox protein ( 363) 220 53.2 2.2e-06 gi|13959687|sp|P35548|MSX2_HUMAN Homeobox protein ( 267) 218 52.7 2.2e-06 gi|6016108|sp|O42230|GBX2_CHICK Homeobox protein G ( 340) 219 53.0 2.4e-06 gi|119664|sp|P23683|EVX1_MOUSE Homeobox even-skipp ( 416) 219 53.1 2.8e-06 gi|71153521|sp|P82976|GBX1_MOUSE Homeobox protein ( 418) 219 53.1 2.8e-06 gi|115502403|sp|Q90472|HXDDA_BRARE Homeobox protei ( 256) 216 52.3 2.9e-06 gi|1176876|sp|Q09604|VAB15_CAEEL Homeobox protein ( 225) 215 52.1 3e-06 gi|27923817|sp|Q9H2Z4|NKX24_HUMAN Homeobox protein ( 353) 216 52.4 3.7e-06 gi|123307|sp|P15142|HM7X_CHICK Homeobox protein CH ( 124) 210 50.9 3.7e-06 gi|119370805|sp|Q1KKR8|HXDBB_FUGRU Homeobox protei ( 260) 213 51.7 4.4e-06 gi|123311|sp|P13297|MSX1_MOUSE Homeobox protein MS ( 293) 213 51.8 4.8e-06 gi|52783536|sp|P63156|BARH1_RAT BarH-like 1 homeob ( 327) 213 51.8 5.2e-06 gi|547660|sp|Q03358|MSX2_MOUSE Homeobox protein MS ( 267) 211 51.3 5.9e-06 gi|6016204|sp|Q90481|NX22A_BRARE Homeobox protein ( 269) 211 51.3 5.9e-06 gi|1708342|sp|P50476|HOX3_XENLA Homeobox protein X ( 388) 213 51.9 6e-06 gi|88913537|sp|Q2VL87|MSX1_MACMU Homeobox protein ( 297) 211 51.4 6.4e-06 gi|116241335|sp|P56177|DLX1_HUMAN Homeobox protein ( 255) 210 51.1 6.5e-06 gi|2495275|sp|Q64317|DLX1_MOUSE Homeobox protein D ( 255) 210 51.1 6.5e-06 gi|462297|sp|Q00400|DTH1_DUGTI Homeobox protein DT ( 533) 214 52.2 6.7e-06 gi|730929|sp|P40764|DLX2_MOUSE Homeobox protein DL ( 332) 210 51.2 8e-06 gi|547650|sp|Q02814|HMD2_CHICK Homeobox protein CH ( 60) 200 48.7 8.4e-06 gi|82248853|sp|Q9W7E8|KOZA_XENLA Homeobox protein ( 213) 207 50.5 8.6e-06 gi|123422|sp|P18264|ROUGH_DROVI Homeobox protein r ( 339) 208 50.8 1.1e-05 gi|23503066|sp|P28360|MSX1_HUMAN Homeobox protein ( 297) 207 50.6 1.1e-05 gi|123415|sp|P09635|HXA4_RAT Homeobox protein Hox- ( 67) 198 48.3 1.2e-05 gi|1708247|sp|P54655|DLL3_XENLA Homeobox protein D ( 289) 206 50.4 1.3e-05 gi|20532295|sp|Q9UIW0|VAX2_HUMAN Ventral anterior ( 290) 206 50.4 1.3e-05 gi|547691|sp|P35993|HOX7P_XENLA Homeobox protein X ( 291) 206 50.4 1.3e-05 gi|14916562|sp|Q9IA18|EVX2_HETFR Homeobox even-ski ( 424) 208 50.9 1.3e-05 gi|75024273|sp|Q9NLC2|HM24_CAEEL Homeobox protein ( 299) 206 50.4 1.3e-05 gi|12644102|sp|P06602|EVE_DROME Segmentation prote ( 376) 207 50.6 1.3e-05 gi|1708253|sp|P53772|DLLH_BRAFL Homeobox protein D ( 321) 206 50.4 1.4e-05 gi|123234|sp|P15857|HM17_APIME Homeobox protein H1 ( 79) 198 48.4 1.4e-05 gi|6016209|sp|O70584|NKX28_MOUSE Homeobox protein ( 235) 204 49.9 1.4e-05 gi|6016208|sp|O15522|NKX28_HUMAN Homeobox protein ( 239) 204 49.9 1.4e-05 gi|462293|sp|Q05917|HME2_CHICK Homeobox protein en ( 288) 205 50.2 1.4e-05 gi|3023960|sp|O02786|MSX1_BOVIN Homeobox protein M ( 297) 205 50.2 1.5e-05 gi|118573072|sp|Q4JM65|NANOG_BOVIN Homeobox protei ( 300) 205 50.2 1.5e-05 gi|2506530|sp|Q03357|MSXA_BRARE Homeobox protein M ( 257) 204 49.9 1.5e-05 gi|12231013|sp|Q03828|EVX2_HUMAN Homeobox even-ski ( 476) 207 50.7 1.6e-05 gi|88913542|sp|Q2VL86|MSX1_SAIBB Homeobox protein ( 297) 204 50.0 1.7e-05 gi|88913539|sp|Q2VL80|MSX1_PERPO Homeobox protein ( 297) 204 50.0 1.7e-05 gi|88913533|sp|Q2VL79|MSX1_DAUMA Homeobox protein ( 297) 204 50.0 1.7e-05 gi|88913536|sp|Q2VL77|MSX1_LEPED Homeobox protein ( 297) 204 50.0 1.7e-05 gi|1705494|sp|P53771|BOX5_NOTVI Homeobox protein b ( 258) 203 49.7 1.7e-05 gi|1174819|sp|P43699|TITF1_HUMAN Thyroid transcrip ( 371) 205 50.2 1.7e-05 gi|1174818|sp|P43698|TITF1_CANFA Thyroid transcrip ( 371) 205 50.2 1.7e-05 gi|136462|sp|P23441|TITF1_RAT Thyroid transcriptio ( 372) 205 50.2 1.7e-05 gi|1717816|sp|P50220|TITF1_MOUSE Thyroid transcrip ( 372) 205 50.2 1.7e-05 gi|88913540|sp|Q2VL76|MSX1_PROVC Homeobox protein ( 297) 203 49.8 1.9e-05 gi|108935827|sp|Q04787|BSH_DROME Brain-specific ho ( 429) 205 50.3 2e-05 gi|1708245|sp|P53774|DLL2_XENLA Homeobox protein D ( 277) 202 49.6 2.1e-05 gi|1170326|sp|P42587|HNK2_XENLA Homeobox protein X ( 196) 200 49.0 2.1e-05 gi|1706722|sp|P49749|EVX2_MOUSE Homeobox even-skip ( 475) 205 50.3 2.1e-05 gi|1709146|sp|P52953|MSX2_RAT Homeobox protein MSX ( 139) 198 48.5 2.1e-05 gi|123308|sp|P28361|MSX1_CHICK Homeobox protein MS ( 249) 201 49.3 2.2e-05 gi|1170297|sp|P42581|HMX3_MOUSE Homeobox protein H ( 458) 204 50.1 2.4e-05 gi|399912|sp|Q01703|MSXC_BRARE Homeobox protein MS ( 273) 201 49.3 2.4e-05 gi|2842748|sp|Q98876|DLX2B_BRARE Homeobox protein ( 276) 201 49.4 2.4e-05 gi|2495277|sp|Q64205|DLX3_MOUSE Homeobox protein D ( 287) 201 49.4 2.5e-05 gi|76789658|sp|O17319|HM24_CAEBR Homeobox protein ( 297) 201 49.4 2.6e-05 gi|399913|sp|Q01704|MSXD_BRARE Homeobox protein MS ( 226) 199 48.9 2.7e-05 gi|123360|sp|P23397|HMEN_HELTR Homeobox protein Ht ( 98) 194 47.6 2.8e-05 gi|18202521|sp|Q26656|HMX_STRPU Homeobox protein H ( 405) 202 49.7 2.8e-05 gi|88913532|sp|Q2VL84|MSX1_CALJA Homeobox protein ( 297) 200 49.2 2.9e-05 gi|88913541|sp|Q2VL82|MSX1_SAGOE Homeobox protein ( 297) 200 49.2 2.9e-05 gi|88913535|sp|Q2VL83|MSX1_LEORO Homeobox protein ( 297) 200 49.2 2.9e-05 gi|88913531|sp|Q2VL85|MSX1_CALGO Homeobox protein ( 297) 200 49.2 2.9e-05 gi|88913534|sp|Q2VL78|MSX1_LEMCA Homeobox protein ( 297) 200 49.2 2.9e-05 gi|417127|sp|Q04896|HME1A_BRARE Homeobox protein e ( 231) 198 48.7 3.2e-05 gi|1352398|sp|P49640|EVX1_HUMAN Homeobox even-skip ( 407) 201 49.5 3.3e-05 gi|1170309|sp|P41936|HM22_CAEEL Homeobox protein c ( 346) 200 49.2 3.3e-05 gi|59799848|sp|Q03356|MSXB_BRARE Homeobox protein ( 257) 198 48.7 3.4e-05 gi|122064290|sp|Q0P4H6|LBX1_XENTR Transcription fa ( 265) 198 48.7 3.5e-05 gi|122064289|sp|Q2PYN8|LBX1_XENLA Transcription fa ( 267) 198 48.7 3.6e-05 gi|462290|sp|Q05916|HME1_CHICK Homeobox protein en ( 333) 199 49.0 3.7e-05 gi|117949813|sp|P52954|LBX1_HUMAN Transcription fa ( 281) 198 48.8 3.7e-05 gi|117949814|sp|P52955|LBX1_MOUSE Transcription fa ( 282) 198 48.8 3.7e-05 gi|6094306|sp|Q26603|SMOX4_SCHMA Homeobox protein ( 98) 192 47.2 3.7e-05 gi|117940095|sp|Q1XID0|LBX1_RAT Transcription fact ( 285) 198 48.8 3.7e-05 gi|1708273|sp|P50223|HMGX7_CHICK Homeobox protein ( 288) 198 48.8 3.8e-05 gi|82247682|sp|Q9IAX9|VAX2B_XENLA Ventral anterior ( 294) 198 48.8 3.8e-05 gi|1346302|sp|P09076|HME30_APIME Homeobox protein ( 109) 192 47.3 4e-05 gi|123361|sp|P14150|HMEN_SCHAM Segmentation polari ( 93) 190 46.8 4.7e-05 gi|462292|sp|P09065|HME1_MOUSE Homeobox protein en ( 401) 197 48.7 5.6e-05 gi|3913487|sp|O60479|DLX3_HUMAN Homeobox protein D ( 287) 195 48.2 5.7e-05 gi|81175174|sp|Q03372|HMSH_DROME Muscle segmentati ( 515) 198 49.0 5.9e-05 gi|1708257|sp|P52730|HME2B_XENLA Homeobox protein ( 265) 194 47.9 6.1e-05 gi|20532396|sp|O43763|TLX2_HUMAN T-cell leukemia h ( 284) 194 48.0 6.5e-05 gi|82248156|sp|Q9PU20|VAX2A_XENLA Ventral anterior ( 302) 194 48.0 6.8e-05 gi|68845650|sp|P34326|HM16_CAEEL Homeobox protein ( 187) 191 47.2 7.1e-05 gi|2495296|sp|P97273|TITF1_CAVPO Thyroid transcrip ( 112) 188 46.5 7.2e-05 gi|2842643|sp|Q61670|HLX1_MOUSE Homeobox protein H ( 476) 196 48.5 7.4e-05 gi|1708250|sp|P50577|DLX5_CHICK Homeobox protein D ( 286) 193 47.8 7.5e-05 gi|13431315|sp|O08686|BARX2_MOUSE Homeobox protein ( 228) 191 47.3 8.3e-05 gi|82223371|sp|Q9PVN2|VAX1_CHICK Ventral anterior ( 327) 193 47.8 8.3e-05 gi|1170318|sp|P09075|HME60_APIME Homeobox protein ( 109) 186 46.1 9.3e-05 gi|1708256|sp|P52729|HME2A_XENLA Homeobox protein ( 265) 191 47.3 9.3e-05 gi|462295|sp|P09066|HME2_MOUSE Homeobox protein en ( 324) 192 47.6 9.5e-05 gi|1708210|sp|P42586|NKX22_MOUSE Homeobox protein ( 273) 191 47.4 9.5e-05 gi|1170292|sp|P43697|NKX22_MESAU Homeobox protein ( 273) 191 47.4 9.5e-05 gi|417131|sp|Q00401|HMH2_DUGTI Homeobox protein DT ( 363) 192 47.6 0.0001 gi|6016205|sp|O95096|NKX22_HUMAN Homeobox protein ( 273) 190 47.2 0.00011 gi|547657|sp|Q05502|HHEX_CHICK Homeobox protein PR ( 277) 190 47.2 0.00011 gi|1708255|sp|P31538|HME1B_XENLA Homeobox protein ( 171) 187 46.4 0.00011 gi|82228200|sp|O93590|ZAX_XENLA Homeobox protein z ( 224) 188 46.7 0.00012 gi|12644164|sp|P22809|BAGP_DROME Homeobox protein ( 382) 191 47.5 0.00012 gi|21431767|sp|P26797|HM19_CAEEL Homeobox protein ( 199) 187 46.5 0.00013 gi|61252066|sp|P22711|TIN_DROME Muscle-specific ho ( 416) 191 47.5 0.00013 gi|47117833|sp|P22808|VND_DROME Homeobox protein v ( 723) 194 48.3 0.00013 gi|1353159|sp|Q09602|YRM6_CAEEL Hypothetical homeo ( 416) 190 47.3 0.00015 gi|38258871|sp|O18400|PITX1_DROME Pituitary homeob ( 509) 191 47.6 0.00015 gi|13431329|sp|Q9UMQ3|BARX2_HUMAN Homeobox protein ( 254) 187 46.5 0.00016 gi|33112231|sp|Q24255|BARH1_DROME Homeobox protein ( 544) 191 47.6 0.00016 gi|1708211|sp|P52952|NKX25_HUMAN Homeobox protein ( 324) 188 46.8 0.00016 gi|14917010|sp|Q05925|HME1_HUMAN Homeobox protein ( 392) 189 47.1 0.00017 gi|82228326|sp|P70061|NKX32_XENLA Homeobox protein ( 329) 188 46.8 0.00017 gi|82246968|sp|Q9DDB0|VAX1B_XENLA Ventral anterior ( 287) 187 46.6 0.00017 gi|1346299|sp|Q01702|DLX3B_BRARE Homeobox protein ( 269) 186 46.4 0.00019 gi|51701276|sp|Q6R3Q6|BSH_BRARE Brain-specific hom ( 227) 185 46.1 0.00019 gi|1705493|sp|P53770|DLX3_NOTVI Homeobox protein D ( 273) 186 46.4 0.00019 gi|2842682|sp|Q91284|DLX3_PLEWA Distal-less-like p ( 274) 186 46.4 0.00019 gi|17377578|sp|Q99801|NKX31_HUMAN Homeobox protein ( 234) 185 46.1 0.00019 gi|2842678|sp|Q90229|DLX3_AMBME Homeobox protein D ( 280) 186 46.4 0.00019 gi|85700416|sp|Q92988|DLX4_HUMAN Homeobox protein ( 240) 185 46.1 0.0002 gi|3913866|sp|Q90788|NKX25_CHICK Homeobox protein ( 294) 186 46.4 0.0002 gi|2833292|sp|Q18273|HM43_CAEEL Homeobox protein c ( 273) 185 46.2 0.00022 gi|21903415|sp|P19622|HME2_HUMAN Homeobox protein ( 333) 186 46.4 0.00022 gi|1708248|sp|P50576|DLX5A_BRARE Homeobox protein ( 283) 185 46.2 0.00022 gi|3023971|sp|Q22909|HM30_CAEEL Homeobox protein c ( 299) 185 46.2 0.00023 gi|21431934|sp|Q11101|YL15_CAEEL Uncharacterized h ( 252) 184 45.9 0.00024 gi|60416352|sp|Q06453|AL_DROME Homeobox protein ar ( 408) 186 46.5 0.00026 gi|547651|sp|Q05640|HMEN_ARTSF Homeobox protein en ( 349) 185 46.2 0.00026 gi|417128|sp|P09015|HME2A_BRARE Homeobox protein e ( 265) 183 45.7 0.00028 gi|82241752|sp|Q801E0|VAX1_BRARE Ventral anterior ( 317) 184 46.0 0.00028 gi|76803558|sp|P17486|EGL5_CAEEL Homeobox protein ( 223) 182 45.5 0.00028 gi|74743553|sp|Q5SQQ9|VAX1_HUMAN Ventral anterior ( 334) 184 46.0 0.00029 gi|81868794|sp|Q9JM00|VAX1_RAT Ventral anterior ho ( 336) 184 46.0 0.00029 gi|3023954|sp|P97436|NKX31_MOUSE Homeobox protein ( 237) 182 45.5 0.0003 gi|109896156|sp|Q2NKI2|VAX1_MOUSE Ventral anterior ( 338) 184 46.0 0.0003 gi|2842750|sp|Q98878|DLX4B_BRARE Homeobox protein ( 254) 182 45.5 0.00031 gi|417129|sp|P31533|HME2B_BRARE Homeobox protein e ( 261) 182 45.5 0.00032 gi|123362|sp|P09532|HMEN_TRIGR Homeobox protein en ( 154) 179 44.8 0.00032 gi|51701282|sp|Q810B3|BSH_MOUSE Brain-specific hom ( 232) 181 45.3 0.00033 gi|51701277|sp|Q6RFL5|BSH_CHICK Brain-specific hom ( 233) 181 45.3 0.00034 gi|62901116|sp|Q9JLZ9|VAX2_RAT Ventral anterior ho ( 292) 182 45.6 0.00035 gi|123356|sp|P27609|HMEN_BOMMO Segmentation polari ( 372) 183 45.9 0.00037 gi|29336523|sp|O88181|BARH2_RAT BarH-like 2 homeob ( 384) 183 45.9 0.00038 gi|114152903|sp|P52906|UNC30_CAEEL Homeobox protei ( 323) 182 45.6 0.00038 gi|47117915|sp|Q9NY43|BARH2_HUMAN BarH-like 2 home ( 387) 183 45.9 0.00038 gi|1708249|sp|P53775|DLL4_XENLA Homeobox protein D ( 285) 181 45.4 0.00039 gi|2833256|sp|Q14774|HLX1_HUMAN Homeobox protein H ( 488) 184 46.1 0.00039 gi|2851503|sp|P20270|HM07_CAEEL Homeobox protein c ( 84) 174 43.6 0.0004 gi|62901394|sp|Q9WTP9|VAX2_MOUSE Ventral anterior ( 292) 181 45.4 0.0004 gi|2842728|sp|Q93899|VAB7_CAEEL Homeobox protein v ( 247) 180 45.1 0.0004 gi|399906|sp|P31535|HMENA_MYXGL Homeobox protein e ( 60) 172 43.1 0.0004 gi|19862512|sp|Q04743|EMX2_HUMAN Homeobox protein ( 252) 180 45.1 0.00041 gi|57015305|sp|Q04744|EMX2_MOUSE Homeobox protein ( 253) 180 45.1 0.00041 gi|123282|sp|P15858|EMS_APIME Homeobox protein H40 ( 74) 173 43.4 0.00041 gi|1170291|sp|P42580|NKX12_MOUSE NK1 transcription ( 305) 181 45.4 0.00041 gi|1170842|sp|P42584|LOX10_HELTR Homeobox protein ( 184) 178 44.6 0.00042 gi|547658|sp|Q03014|HHEX_HUMAN Homeobox protein PR ( 270) 180 45.2 0.00043 gi|2495278|sp|P70396|DLX5_MOUSE Homeobox protein D ( 289) 180 45.2 0.00046 gi|1708246|sp|P50575|DLX5_RAT Homeobox protein DLX ( 289) 180 45.2 0.00046 gi|12644329|sp|P56178|DLX5_HUMAN Homeobox protein ( 289) 180 45.2 0.00046 gi|18203019|sp|Q9I8K3|PITX3_XENLA Pituitary homeob ( 292) 180 45.2 0.00046 gi|25009568|sp|Q91V10|VSX1_MOUSE Visual system hom ( 363) 181 45.4 0.00047 gi|82241753|sp|Q801E1|VAX2_BRARE Ventral anterior ( 307) 180 45.2 0.00048 gi|1170294|sp|P42582|NKX25_MOUSE Homeobox protein ( 318) 180 45.2 0.00049 gi|1170322|sp|P43120|HHEX_MOUSE Homeobox protein P ( 271) 179 45.0 0.0005 gi|123395|sp|P22807|SLOU_DROME Homeobox protein sl ( 659) 184 46.2 0.0005 gi|6016207|sp|P43688|NKX26_MOUSE Homeobox protein ( 289) 179 45.0 0.00052 gi|13431535|sp|O97670|HESX1_RABIT Homeobox express ( 175) 176 44.2 0.00054 gi|71658824|sp|Q8VIB5|BARH2_MOUSE BarH-like 2 home ( 384) 180 45.3 0.00057 gi|1708243|sp|P50574|DLX2A_BRARE Homeobox protein ( 270) 178 44.8 0.00057 gi|6093722|sp|O93385|PITX2_CHICK Pituitary homeobo ( 333) 179 45.0 0.00058 gi|3915616|sp|P79775|ANF1_CHICK Homeobox protein A ( 196) 176 44.3 0.00059 gi|1708242|sp|P53773|DLL1_XENLA Homeobox protein D ( 250) 177 44.5 0.00062 gi|22096366|sp|P97334|NKX23_MOUSE Homeobox protein ( 362) 179 45.0 0.00062 gi|6093633|sp|O09113|OTP_MOUSE Homeobox protein or ( 325) 178 44.8 0.00066 gi|66774174|sp|P20009|DLL_DROME Homeotic protein d ( 327) 178 44.8 0.00066 gi|399982|sp|P31314|TLX1_HUMAN T-cell leukemia hom ( 330) 178 44.8 0.00067 gi|82236381|sp|Q6GLB9|EMX1_XENTR Homeobox protein ( 233) 176 44.3 0.00067 gi|6016286|sp|Q61663|TLX2_MOUSE T-cell leukemia ho ( 284) 177 44.6 0.00068 gi|97536330|sp|O02491|HMEN_ANOGA Segmentation pola ( 596) 181 45.6 0.0007 gi|82228187|sp|O93528|VAX1A_XENLA Ventral anterior ( 295) 177 44.6 0.0007 gi|2842751|sp|Q98879|DLX4A_BRARE Homeobox protein ( 250) 176 44.3 0.00071 gi|1170295|sp|P42583|NKX25_XENLA Homeobox protein ( 299) 177 44.6 0.00071 gi|27923815|sp|Q8TAU0|NKX23_HUMAN Homeobox protein ( 364) 178 44.9 0.00072 gi|6016206|sp|O35767|NKX25_RAT Homeobox protein Nk ( 318) 177 44.6 0.00074 gi|1708228|sp|P53547|HM01_CAEEL Homeobox protein c ( 132) 172 43.3 0.00075 gi|41712568|sp|P02836|HMEN_DROME Segmentation pola ( 552) 180 45.4 0.00076 gi|1170310|sp|P19601|SAX1_CHICK Homeobox protein S ( 232) 175 44.1 0.00077 gi|3023955|sp|P97503|NKX32_MOUSE Homeobox protein ( 333) 177 44.6 0.00077 gi|6016210|sp|P78367|NKX32_HUMAN Homeobox protein ( 333) 177 44.6 0.00077 gi|123359|sp|P09145|HMEN_DROVI Segmentation polari ( 584) 180 45.4 0.00079 gi|2842749|sp|Q98877|DLX6A_BRARE Homeobox protein ( 247) 175 44.1 0.00081 gi|82241954|sp|Q804S6|EMX1_BRARE Homeobox protein ( 231) 174 43.9 0.00088 gi|12644330|sp|P56179|DLX6_HUMAN Homeobox protein ( 175) 172 43.4 0.00093 gi|74762336|sp|Q6NSW7|NANP8_HUMAN Homeobox protein ( 305) 175 44.2 0.00095 gi|17380175|sp|Q9W751|PITX1_XENLA Pituitary homeob ( 305) 175 44.2 0.00095 gi|118573074|sp|Q3LTE0|NANOG_PANTR Homeobox protei ( 305) 175 44.2 0.00095 gi|33112232|sp|Q24256|BARH2_DROME Homeobox protein ( 645) 179 45.2 0.00098 gi|6014979|sp|P70397|DLX6_MOUSE Homeobox protein D ( 158) 171 43.2 0.00099 gi|27735196|sp|P43687|HMX2_MOUSE Homeobox protein ( 273) 174 44.0 0.001 gi|13626107|sp|O95076|ALX3_HUMAN Homeobox protein ( 343) 175 44.2 0.001 gi|2842747|sp|Q98875|DLX1A_BRARE Homeobox protein ( 252) 173 43.7 0.0011 gi|75042806|sp|Q5TM84|NANOG_MACFA Homeobox protein ( 305) 174 44.0 0.0011 gi|85701305|sp|P70436|DLX4_MOUSE Homeobox protein ( 240) 172 43.5 0.0012 gi|14194482|sp|Q9W6D8|BARX1_CHICK Homeobox protein ( 207) 171 43.3 0.0012 gi|123257|sp|P23681|HXB8_CHICK Homeobox protein Ho ( 74) 165 41.8 0.0013 gi|118573073|sp|Q9H9S0|NANOG_HUMAN Homeobox protei ( 305) 173 43.8 0.0013 gi|14194481|sp|Q9HBU1|BARX1_HUMAN Homeobox protein ( 225) 171 43.3 0.0013 gi|123387|sp|P27610|HMIN_BOMMO Homeobox protein in ( 476) 175 44.3 0.0013 gi|2506524|sp|P42585|HBX3_ECHGR Homeobox protein E ( 167) 169 42.8 0.0014 gi|14194479|sp|Q9DED6|BAX1B_CHICK Homeobox protein ( 247) 171 43.3 0.0014 gi|14194480|sp|Q9ER42|BARX1_MOUSE Homeobox protein ( 254) 171 43.3 0.0014 gi|122065176|sp|Q04742|EMX1_MOUSE Homeobox protein ( 257) 171 43.3 0.0014 gi|57015304|sp|Q04741|EMX1_HUMAN Homeobox protein ( 257) 171 43.3 0.0014 gi|27923733|sp|Q96QS3|ARX_HUMAN Homeobox protein A ( 562) 175 44.4 0.0015 gi|13626105|sp|O70137|ALX3_MOUSE Homeobox protein ( 343) 172 43.6 0.0016 gi|399907|sp|P31537|HME1A_XENLA Homeobox protein e ( 60) 162 41.1 0.0016 gi|399910|sp|P31534|HMEN_LAMPL Homeobox protein en ( 60) 162 41.1 0.0016 gi|3023296|sp|Q91617|ANF2_XENLA Homeobox protein A ( 183) 168 42.6 0.0017 gi|6016212|sp|Q60554|NKX61_MESAU Homeobox protein ( 364) 171 43.5 0.0019 gi|18203562|sp|Q9W5Z2|PITX2_BRARE Pituitary homeob ( 314) 170 43.2 0.0019 gi|3023957|sp|Q61658|HESX1_MOUSE Homeobox expresse ( 185) 167 42.4 0.0019 gi|27923957|sp|O35085|ARX_MOUSE Homeobox protein A ( 564) 173 44.0 0.002 gi|399911|sp|P18488|EMS_DROME Homeotic protein emp ( 497) 172 43.8 0.0021 gi|81866022|sp|Q80Z64|NANOG_MOUSE Homeobox protein ( 305) 169 43.0 0.0022 gi|81889643|sp|Q5TM83|NANOG_MUSMM Homeobox protein ( 305) 169 43.0 0.0022 gi|12230168|sp|Q9UBX0|HESX1_HUMAN Homeobox express ( 185) 166 42.2 0.0022 gi|1170433|sp|P43345|TLX1_MOUSE T-cell leukemia ho ( 332) 169 43.0 0.0023 gi|6016284|sp|O93366|TLX1_CHICK T-cell leukemia ho ( 297) 168 42.8 0.0024 gi|123239|sp|P22544|BARH1_DROAN Homeobox protein B ( 606) 172 43.8 0.0025 gi|6174907|sp|Q99697|PITX2_HUMAN Pituitary homeobo ( 317) 168 42.8 0.0026 gi|18202033|sp|O42201|RXA_XENLA Retinal homeobox p ( 322) 168 42.8 0.0026 gi|55584056|sp|P05527|HMIN_DROME Homeobox protein ( 576) 171 43.6 0.0027 gi|399908|sp|P31536|HMENB_MYXGL Homeobox protein e ( 60) 158 40.3 0.0028 gi|6016300|sp|O42370|HXD3A_BRARE Homeobox protein ( 167) 163 41.6 0.0031 gi|118573192|sp|Q940J1|ATB16_ARATH Homeobox-leucin ( 294) 166 42.4 0.0032 gi|6016287|sp|O93367|TLX3_CHICK T-cell leukemia ho ( 297) 166 42.4 0.0032 gi|25009569|sp|Q9GMA3|VSX1_BOVIN Visual system hom ( 365) 167 42.7 0.0033 gi|6174908|sp|P97474|PITX2_MOUSE Pituitary homeobo ( 317) 166 42.4 0.0034 gi|17380159|sp|Q9R0W1|PITX2_RAT Pituitary homeobox ( 324) 166 42.4 0.0035 gi|17380174|sp|Q9PWR3|PITX2_XENLA Pituitary homeob ( 326) 166 42.4 0.0035 gi|12643283|sp|P46601|HAT2_ARATH Homeobox-leucine ( 283) 165 42.2 0.0036 gi|18202028|sp|O35602|RX_MOUSE Retinal homeobox pr ( 342) 166 42.4 0.0036 gi|51702771|sp|P63014|PRRX1_RAT Paired mesoderm ho ( 245) 164 41.9 0.0037 gi|3023297|sp|Q91898|ANF1_XENLA Homeobox protein A ( 187) 162 41.4 0.0039 gi|6174916|sp|P54821|PRRX1_HUMAN Paired mesoderm h ( 245) 163 41.7 0.0042 gi|21431765|sp|P20269|HM05_CAEEL Homeobox protein ( 148) 160 41.0 0.0043 gi|3122612|sp|O35160|PITX3_MOUSE Pituitary homeobo ( 302) 164 42.0 0.0043 gi|6226672|sp|P81062|PITX3_RAT Pituitary homeobox ( 302) 164 42.0 0.0043 gi|6093723|sp|O75364|PITX3_HUMAN Pituitary homeobo ( 302) 164 42.0 0.0043 gi|27734433|sp|Q99MA9|NKX61_MOUSE Homeobox protein ( 365) 165 42.3 0.0044 gi|6016213|sp|O35762|NKX61_RAT Homeobox protein Nk ( 365) 165 42.3 0.0044 gi|6016211|sp|P78426|NKX61_HUMAN Homeobox protein ( 367) 165 42.3 0.0044 gi|6093720|sp|P56673|PITX1_CHICK Pituitary homeobo ( 311) 164 42.0 0.0044 gi|108935922|sp|P78337|PITX1_HUMAN Pituitary homeo ( 314) 164 42.0 0.0044 gi|6174906|sp|P70314|PITX1_MOUSE Pituitary homeobo ( 315) 164 42.0 0.0045 gi|18202678|sp|Q99NA7|PITX1_RAT Pituitary homeobox ( 315) 164 42.0 0.0045 gi|18202032|sp|O42115|ARX_BRARE Aristaless-related ( 453) 166 42.5 0.0045 gi|18203127|sp|Q9JLT7|RX_RAT Retinal homeobox prot ( 342) 164 42.0 0.0048 gi|115502468|sp|O43711|TLX3_HUMAN T-cell leukemia ( 291) 163 41.8 0.0048 gi|6016289|sp|O55144|TLX3_MOUSE T-cell leukemia ho ( 291) 163 41.8 0.0048 gi|1170320|sp|P21711|MIX1_XENLA Homeobox protein M ( 377) 164 42.1 0.0051 gi|6094307|sp|Q26604|SMOX5_SCHMA Homeobox protein ( 284) 162 41.6 0.0054 gi|75155843|sp|Q8LFD3|ATB23_ARATH Homeobox-leucine ( 255) 161 41.3 0.0057 gi|37537960|sp|Q8NHV9|PEPP1_HUMAN Paired-like home ( 184) 159 40.8 0.0058 gi|18202037|sp|O42567|RXB_XENLA Retinal homeobox p ( 325) 162 41.6 0.006 gi|119372174|sp|O60393|NOBOX_HUMAN Homeobox protei ( 360) 162 41.7 0.0065 gi|6016230|sp|Q26601|SMOX2_SCHMA Homeobox protein ( 524) 164 42.2 0.0066 gi|13431325|sp|Q9N0M2|BARX2_SHEEP Homeobox protein ( 133) 156 40.1 0.0069 gi|13626112|sp|Q9H161|ALX4_HUMAN Homeobox protein ( 411) 162 41.7 0.0072 gi|47117827|sp|P09081|BCD_DROME Homeotic protein b ( 494) 163 42.0 0.0073 gi|109940203|sp|Q4LAL6|ALX4_BOVIN Homeobox protein ( 397) 161 41.5 0.0081 gi|12643549|sp|O18381|PAX6_DROME Paired box protei ( 857) 164 42.3 0.0097 gi|17374365|sp|P58304|CHX10_HUMAN Homeobox protein ( 361) 159 41.1 0.0099 gi|81916050|sp|Q8VIH1|NOBOX_MOUSE Homeobox protein ( 527) 161 41.6 0.01 gi|1168547|sp|P46668|ATHB6_ARATH Homeobox-leucine ( 311) 158 40.8 0.01 gi|3023649|sp|P87394|DLX4_ELECQ Homeobox protein D ( 131) 153 39.5 0.01 gi|25009574|sp|Q9I9A3|CHX10_ORYLA Homeobox protein ( 393) 159 41.1 0.011 gi|17380297|sp|Q9Y2V3|RX_HUMAN Retinal homeobox pr ( 346) 158 40.8 0.011 gi|25009572|sp|Q9NZR4|VSX1_HUMAN Visual system hom ( 365) 158 40.9 0.011 gi|37537987|sp|Q9BQY4|PEPP2_HUMAN Paired-like home ( 288) 156 40.4 0.013 gi|75151248|sp|Q8GXM7|ATHBX_ARATH Homeobox-leucine ( 206) 154 39.9 0.013 gi|3024147|sp|Q91685|MIX2_XENLA Homeobox protein M ( 369) 157 40.7 0.013 gi|1168546|sp|P46667|ATHB5_ARATH Homeobox-leucine ( 312) 156 40.4 0.013 gi|74762537|sp|Q8N7R0|NANG2_HUMAN Homeobox protein ( 232) 154 39.9 0.014 gi|13626102|sp|O35137|ALX4_MOUSE Homeobox protein ( 399) 157 40.7 0.014 gi|3023595|sp|Q61412|CHX10_MOUSE Homeobox protein ( 361) 156 40.5 0.015 gi|25008342|sp|Q9IAL1|CHX10_CHICK Homeobox protein ( 377) 156 40.5 0.016 gi|18203379|sp|Q9PVX0|RX2_CHICK Retinal homeobox p ( 317) 155 40.2 0.016 gi|18202522|sp|Q26657|ALX_STRPU Aristaless homeobo ( 327) 155 40.2 0.016 gi|17380298|sp|O42356|RX1_BRARE Retinal homeobox p ( 330) 155 40.2 0.016 gi|1170409|sp|P46604|HAT22_ARATH Homeobox-leucine ( 278) 154 40.0 0.016 gi|1708051|sp|P53544|GSC_BRARE Homeobox protein go ( 240) 153 39.7 0.017 gi|1708050|sp|P53546|GSCB_XENLA Homeobox protein g ( 243) 153 39.7 0.017 gi|1708049|sp|P29454|GSCA_XENLA Homeobox protein g ( 243) 153 39.7 0.017 gi|1708052|sp|P53545|GSC_CHICK Homeobox protein go ( 245) 153 39.7 0.017 gi|12644475|sp|Q99811|PRRX2_HUMAN Paired mesoderm ( 253) 153 39.7 0.017 gi|462296|sp|Q02591|GSC_MOUSE Homeobox protein goo ( 256) 153 39.8 0.017 gi|61252078|sp|P56915|GSC_HUMAN Homeobox protein g ( 257) 153 39.8 0.017 gi|18202262|sp|O97039|RX_DUGJA Retinal homeobox pr ( 268) 153 39.8 0.018 gi|18203380|sp|Q9PVY0|RX1_CHICK Retinal homeobox p ( 228) 152 39.5 0.018 gi|17380303|sp|Q9I9A2|RX2_ORYLA Retinal homeobox p ( 327) 154 40.0 0.018 gi|42558891|sp|Q8SQ03|CRX_CANFA Cone-rod homeobox ( 299) 153 39.8 0.02 gi|6174915|sp|Q05437|PRRX1_CHICK Paired mesoderm h ( 245) 151 39.3 0.022 gi|6174918|sp|Q06348|PRRX2_MOUSE Paired mesoderm h ( 247) 151 39.3 0.022 gi|123412|sp|P06601|PRD_DROME Segmentation protein ( 613) 156 40.6 0.023 gi|6093752|sp|Q62066|PHX2A_MOUSE Paired mesoderm h ( 280) 151 39.4 0.025 gi|17432948|sp|Q9FVI6|FWA_ARATH Homeobox protein F ( 686) 156 40.7 0.025 gi|77416873|sp|O14813|PHX2A_HUMAN Paired mesoderm ( 284) 151 39.4 0.025 gi|2495273|sp|P55813|HBX4_ECHGR Homeobox protein E ( 60) 142 37.1 0.026 gi|13626175|sp|Q9XSK0|CRX_BOVIN Cone-rod homeobox ( 299) 151 39.4 0.026 gi|8134639|sp|Q62782|PHX2A_RAT Paired mesoderm hom ( 281) 150 39.2 0.028 gi|116241356|sp|Q8N693|ESX1L_HUMAN Extraembryonic, ( 406) 152 39.7 0.029 gi|118573191|sp|Q8LC03|ATB13_ARATH Homeobox-leucin ( 294) 150 39.2 0.029 gi|3023330|sp|P92953|ATHB4_ARATH Homeobox-leucine ( 318) 150 39.2 0.031 gi|2495283|sp|Q91975|HOXE_CHICK Homeobox protein C ( 157) 146 38.2 0.031 gi|42559162|sp|Q9GLL9|PROP1_PIG Homeobox protein p ( 226) 148 38.7 0.031 gi|400002|sp|P31256|HXB6_XENLA Homeobox protein Ho ( 48) 139 36.4 0.033 gi|6093634|sp|O76971|OTP_PARLI Homeobox protein or ( 364) 150 39.3 0.035 gi|75262744|sp|Q9FN29|ATB52_ARATH Homeobox-leucine ( 156) 145 38.0 0.036 gi|123312|sp|P14159|HXD4_SHEEP Homeobox protein Ho ( 46) 138 36.2 0.036 gi|123249|sp|P14157|HXB5_SHEEP Homeobox protein Ho ( 46) 138 36.2 0.036 gi|90111820|sp|Q15699|CART1_HUMAN Cartilage homeop ( 326) 149 39.0 0.036 gi|25009570|sp|Q9IAL2|VSX1_CHICK Visual system hom ( 350) 149 39.1 0.039 gi|123465|sp|P28468|HOX1_HALRO Homeobox protein AH ( 741) 153 40.1 0.04 gi|67460551|sp|Q8C8B0|CART1_MOUSE Cartilage homeop ( 326) 148 38.8 0.042 gi|3023581|sp|Q63087|CART1_RAT Cartilage homeoprot ( 326) 148 38.8 0.042 gi|18202035|sp|O42357|RX2_BRARE Retinal homeobox p ( 327) 148 38.8 0.042 gi|25009567|sp|O42477|CHX10_BRARE Homeobox protein ( 395) 149 39.1 0.042 gi|18203021|sp|Q9I9D5|RX1_ASTFA Retinal homeobox p ( 334) 148 38.8 0.043 gi|3287764|sp|O43186|CRX_HUMAN Cone-rod homeobox p ( 299) 147 38.6 0.045 gi|81913785|sp|Q8BYH0|PRRXL_MOUSE Paired-related h ( 220) 145 38.1 0.047 gi|12644275|sp|P46602|HAT3_ARATH Homeobox-leucine ( 315) 147 38.6 0.047 gi|51701487|sp|Q8STR8|HD4_ENCCU Homeobox protein H ( 132) 142 37.3 0.047 gi|60390216|sp|Q9HG12|MATA1_KLULA Mating-type prot ( 228) 145 38.1 0.048 gi|66774180|sp|P10035|HMH2_DROME Homeobox protein ( 418) 148 38.9 0.051 gi|6093753|sp|O35690|PHX2B_MOUSE Paired mesoderm h ( 314) 146 38.4 0.054 gi|6093750|sp|Q90963|PRRX2_CHICK Paired mesoderm h ( 165) 142 37.4 0.056 gi|3023596|sp|Q91574|CART1_XENLA Cartilage homeopr ( 335) 146 38.4 0.056 gi|75264482|sp|Q9LZR0|ATB51_ARATH Putative homeobo ( 236) 143 37.7 0.065 gi|18202036|sp|O42358|RX3_BRARE Retinal homeobox p ( 292) 144 38.0 0.067 gi|6226633|sp|Q93352|HM36_CAEEL Homeobox protein c ( 254) 143 37.8 0.069 gi|90101578|sp|Q00466|HAT7_ARATH Homeobox-leucine ( 314) 144 38.0 0.071 gi|6094305|sp|Q26602|SMOX3_SCHMA Homeobox protein ( 288) 143 37.8 0.076 gi|3287765|sp|O54751|CRX_MOUSE Cone-rod homeobox p ( 299) 143 37.8 0.078 gi|6093632|sp|P56672|OTP_DROME Homeobox protein or ( 264) 142 37.6 0.081 gi|62900739|sp|Q9TTD8|PROP1_CANFA Homeobox protein ( 226) 141 37.3 0.083 gi|3024855|sp|Q90277|VSX1_CARAU Visual system home ( 341) 143 37.8 0.087 gi|60390194|sp|Q708A1|MATA1_KLUDE Mating-type prot ( 122) 137 36.3 0.089 gi|17380504|sp|Q9W2Q1|RX_DROME Retinal homeobox pr ( 873) 148 39.1 0.09 gi|462280|sp|P34663|HM23_CAEEL Homeobox protein ce ( 305) 142 37.6 0.091 gi|2506525|sp|P46607|HGL2_ARATH Homeobox protein G ( 745) 147 38.9 0.092 gi|1706313|sp|P52950|DBX1_MOUSE Homeobox protein D ( 335) 142 37.6 0.098 >>gi|14916603|sp|Q9PWD5|HXA9_MORSA Homeobox protein Hox- (269 aa) initn: 1838 init1: 1838 opt: 1838 Z-score: 1990.3 bits: 376.0 E(): 1.1e-103 Smith-Waterman score: 1838; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269) 10 20 30 40 50 60 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPV 10 20 30 40 50 60 70 80 90 100 110 120 Hoxa9 FGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRYQSWLLEPMSGSLPMAGLPTTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 FGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRYQSWLLEPMSGSLPMAGLPTTH 70 80 90 100 110 120 130 140 150 160 170 180 Hoxa9 HYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 HYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEKP 130 140 150 160 170 180 190 200 210 220 230 240 Hoxa9 GLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 GLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLN 190 200 210 220 230 240 250 260 Hoxa9 LTERQVKIWFQNRRMKMKKFNKDGAPKDE ::::::::::::::::::::::::::::: gi|149 LTERQVKIWFQNRRMKMKKFNKDGAPKDE 250 260 >>gi|6016294|sp|O42506|HXA9A_FUGRU Homeobox protein Hox- (283 aa) initn: 1559 init1: 809 opt: 1103 Z-score: 1197.4 bits: 229.3 E(): 1.6e-59 Smith-Waterman score: 1599; 84.2% identity (91.5% similar) in 284 aa overlap (1-269:1-283) 10 20 30 40 50 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISD-HSELGTCTFPSKPP :::::::::::::::::::.:::::::: .::: ::.:: :::.: :::::::.:::::: gi|601 MSTSGTLTSYYVDSLILPENEELSVPRYSAGPGHQHSRQPASIGDPHSELGTCSFPSKPP 10 20 30 40 50 60 60 70 80 90 100 110 Hoxa9 VFGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRYQSWLLEPMSGSLPMAGLPTT ::::::::::::::::::::::::::: :::::..::::::::::::::::::::::::: gi|601 VFGPSWSHVPAQFPGTVSSVYHHHYGHHQGPVGTETDGRYQSWLLEPMSGSLPMAGLPTT 70 80 90 100 110 120 120 130 140 150 160 170 Hoxa9 HHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEK :::::::.:::.:. ::::::::::::::::::::::: :::::..:...:: . ..::: gi|601 HHYGIKPDGLGVRSGGALPGSHTALLLSDYANGTVATAPPVEKDAVSSHTGD-GVDTEEK 130 140 150 160 170 180 190 200 210 220 Hoxa9 PGLDPSKSL--------------QNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNT :::::::: ..::::::::::::::::::::::::::::::::::: gi|601 PGLDPSKSAVYITFYLYRTYSGDRDNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNT 180 190 200 210 220 230 230 240 250 260 Hoxa9 YLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::::::::::::::::::::::::::::::::::::::::::. gi|601 YLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDD 240 250 260 270 280 >>gi|6166219|sp|P31269|HXA9_HUMAN Homeobox protein Hox-A (272 aa) initn: 941 init1: 488 opt: 907 Z-score: 986.2 bits: 190.2 E(): 9.3e-48 Smith-Waterman score: 907; 55.6% identity (74.2% similar) in 279 aa overlap (1-269:1-272) 10 20 30 40 50 Hoxa9 MSTSGTLTSYYVDSLIL--PESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKP :.:.:.: .:::::..: ..:::: :: : : ::.:....: ... :.: :: gi|616 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA 10 20 30 40 50 60 60 70 80 90 100 110 Hoxa9 PVFGPSWSHVPAQFPGTV-SSVYHHH----YGHPQGPVGADT-DGRY-QSWLLEPMSGSL ::: ::. : : ..: ..::::: : :::.::.: . :::: .::: :: :.: gi|616 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWL-EPTPGAL 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 PMAGLPTTHHYGIKPEGLGTR-ADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAG .::::... :::::: :..: .: .:: : :.::: :. ::... .... gi|616 SFAGLPSSRPYGIKPEPLSARRGDCPTLDTHT-LSLTDYACGS----PPVDREKQPSEGA 120 130 140 150 160 170 180 190 200 210 220 230 Hoxa9 DVSGEAEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRD ..::.. : : :::..::::: .:::::::::::: :::::::::: ::::: gi|616 FSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRD 180 190 200 210 220 230 240 250 260 Hoxa9 RRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::::::::::::::::::::::::::::.::: : ::: gi|616 RRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRA-KDE 240 250 260 270 >>gi|6166220|sp|P09631|HXA9_MOUSE Homeobox protein Hox-A (271 aa) initn: 940 init1: 488 opt: 898 Z-score: 976.6 bits: 188.4 E(): 3.2e-47 Smith-Waterman score: 898; 55.0% identity (74.5% similar) in 278 aa overlap (1-269:1-271) 10 20 30 40 50 Hoxa9 MSTSGTLTSYYVDSLIL--PESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKP :.:.:.: .:::::..: ..::.. :: : : ::.:....: ... :.: :: gi|616 MATTGALGNYYVDSFLLGADAADELGAGRYAPGTLGQPPRQAAALAEHPDFSPCSFQSKA 10 20 30 40 50 60 60 70 80 90 100 110 Hoxa9 PVFGPSWSHVPAQFPGTV-SSVYHHH---YGHPQGPVGADT-DGRY-QSWLLEPMSGSLP ::: ::. : : ..: ..::::: : :::.::.: . :::: .::: :: :.: gi|616 AVFGASWNPVHAAGANAVPAAVYHHHHHPYVHPQAPVAAAAPDGRYMRSWL-EPTPGALS 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 MAGLPTTHHYGIKPEGLGTR-ADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGD .::::... :::::: :..: .: .:: : :.::: :. ::... .... gi|616 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHT-LSLTDYACGS----PPVDREKQPSEGAF 120 130 140 150 160 170 180 190 200 210 220 230 Hoxa9 VSGEAEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDR ..::.. : : :::..::::: .:::::::::::: :::::::::: :::::: gi|616 SENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDR 180 190 200 210 220 230 240 250 260 Hoxa9 RYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE ::::::::::::::::::::::::::::.::: : ::: gi|616 RYEVARLLNLTERQVKIWFQNRRMKMKKINKDRA-KDE 240 250 260 270 >>gi|14916598|sp|Q9IA26|HXA9_HETFR Homeobox protein Hox- (260 aa) initn: 757 init1: 450 opt: 786 Z-score: 856.0 bits: 166.1 E(): 1.7e-40 Smith-Waterman score: 903; 55.7% identity (76.4% similar) in 271 aa overlap (1-269:1-259) 10 20 30 40 50 60 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPV ::::::...:::::::. :.:.: :: :: : .::.: ...: ... :.: :: : gi|149 MSTSGTISNYYVDSLIMHENEDLLSSRYASGSLAQASRQAA-LTEHPDFSPCNFQSKATV 10 20 30 40 50 70 80 90 100 110 Hoxa9 FGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRY-QSWLLEPMSGSLPMAGLPTT :. ::: : :: ... .::: : : :.:..: :::: .::: .:: :.: . :::.. gi|149 FSTSWSPVHAQSSANMPTVYHP-YMH-QAPIAAAPDGRYMRSWL-DPMPGTLSFPGLPSS 60 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 HHYGIKPEGLGTR-ADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEE .::::::: ...: .: . .:: : ::.:. :: . . : . ..: . :.. ..:. gi|149 RHYGIKPEPVASRRSDCTTFETHT-LALSEYTCGTSPADKRVSEVSFSENNGETESNAD- 120 130 140 150 160 170 180 190 200 210 220 230 Hoxa9 KPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARL : .:: ::: .::::: .:::::::::::: :::::::::: ::::::::::::. gi|149 KLHMDP-----NNPSANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARV 180 190 200 210 220 240 250 260 Hoxa9 LNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::::::::::::::::::::.::. :::. gi|149 LNLTERQVKIWFQNRRMKMKKINKE-RPKDDR 230 240 250 260 >>gi|14916586|sp|Q9IA13|HXD9_HETFR Homeobox protein Hox- (265 aa) initn: 619 init1: 430 opt: 740 Z-score: 806.3 bits: 156.9 E(): 9.8e-38 Smith-Waterman score: 740; 49.6% identity (69.8% similar) in 268 aa overlap (1-262:1-258) 10 20 30 40 50 60 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPV :::.::. .::::::: :.:.: . :: .: .: :. ..: :....:.: :: . gi|149 MSTGGTIHNYYVDSLIGQETEDLYAARYAQGSHSTASRPSG-VADSSDFSSCSFTSKSTA 10 20 30 40 50 70 80 90 100 110 Hoxa9 FGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRY-QSWLLEPMSGSLPMAGL-PT :. :: : : ..:...:: : : :. ..: : :: .::: ::.:.:. . :. :. gi|149 FSNPWSPVHPQSSAAVAGIYHP-YMH-QSHLAAG-DTRYVRSWL-EPLSSSVSFPGFHPN 60 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 THHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATAS---PVEKDTLSGQAGDVSGE .::::::: :... .: : ... :. : : :... . : . gi|149 GRHYGIKPETLSSKRTECSSYELQTLSLPEFTCGSYPECREKLPKELGCTSSETTSNSEH 120 130 140 150 160 170 180 190 200 210 220 230 Hoxa9 AEEKPG-LDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYE ::: ::: :.:. ::.:: .::::::::::.: :::::::::: ::::::::: gi|149 KEEKQQQLDP-----NHPAINWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYE 180 190 200 210 220 230 240 250 260 Hoxa9 VARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::.:::::::::::::::::::::.:: gi|149 VARILNLTERQVKIWFQNRRMKMKKMNKVKNNEEP 240 250 260 >>gi|21263750|sp|Q9PVR2|HXD9_ORYLA Homeobox protein Hox- (271 aa) initn: 670 init1: 437 opt: 704 Z-score: 767.3 bits: 149.7 E(): 1.4e-35 Smith-Waterman score: 704; 44.3% identity (70.0% similar) in 280 aa overlap (1-269:8-270) 10 20 30 40 50 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCT ::.:::...::::... : :.. .:: .. : :.. .:......:. gi|212 MSRKRSKMSSSGTISNYYVDGVMAQEPEDVYAPRLIQASHTVTPRPSGA-GDNADFSSCN 10 20 30 40 50 60 70 80 90 100 110 Hoxa9 FPSKPPVFGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRY---QSWLLEPMSGS : :: ::. ::: : : ..:: . : . : . ::::: . :. ::.:. gi|212 FAPKPGVFSSSWSSVHPQ------GIYHPYVHHHHQPHLSATDGRYVGVRPWM-EPISNH 60 70 80 90 100 110 120 130 140 150 160 Hoxa9 LPMAGL-PT-THHYGIKPEGLGTRA---DGALPGSHTALLLSDYANGTVATASPVEKDTL . .::. :. :. :: ::. : ... : : .. . .... : . : : :. gi|212 VSFAGFHPSNTRPYGAKPDVLPAKVPECDTLEPEARP--VPAEFSCGGALGAEKVTKE-- 120 130 140 150 160 170 180 190 200 210 220 Hoxa9 SGQAGDVSGEAE---EKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFL . .:...:...: :: ::: :::..::.:: .::::::::::.: :::::::: gi|212 QRRASEISSHGEPKDEKQQLDP-----NNPAANWIHARSTRKKRCPYTKYQTLELEKEFL 170 180 190 200 210 220 230 240 250 260 Hoxa9 FNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE .: :::::::.::::.:.:::::::::::::::::::.:.. . ::. gi|212 YNMYLTRDRRFEVARILSLTERQVKIWFQNRRMKMKKMNREKGGKDQL 230 240 250 260 270 >>gi|119370801|sp|Q1KKS9|HXD9A_FUGRU Homeobox protein Ho (273 aa) initn: 588 init1: 429 opt: 698 Z-score: 760.8 bits: 148.5 E(): 3.3e-35 Smith-Waterman score: 698; 45.3% identity (69.7% similar) in 274 aa overlap (1-268:8-271) 10 20 30 40 50 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCT ::::: :.. :::... .::.. :: ..: . : : :..:......:. gi|119 MSRKRSKMSTSGPLSNCYVDAIMGQDSEDVYGARYIQAPHMVTPRPS-SVGDNADFASCN 10 20 30 40 50 60 70 80 90 100 110 Hoxa9 FPSKPPVFGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRY---QSWLLEPMSGS : : ::. ::: : : : :::. : :. . . .:::: .::. ::.:. gi|119 FAPKSAVFSSSWSSVHPQ--GIYHPYVHHHHHHHQSHLPS-ADGRYVGVRSWM-EPISNH 60 70 80 90 100 110 120 130 140 150 160 Hoxa9 LPMAGLPTT-HHYGIKPEGLGTR-ADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQ . .::: :. . :: ::: : . :. ... : . .. ...: . ..:. ... gi|119 VSFAGLHTSGRSYGTKPEVLPLKDAECDALEAESRPLSAGFVCAAAACPDRARKEHGASE 120 130 140 150 160 170 170 180 190 200 210 220 Hoxa9 AGDVSGEAEEKPG-LDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYL . . . ::: ::: :::..::.:: .::::::::::.: ::::::::.: :: gi|119 LPSHDEHKEEKQQQLDP-----NNPAANWIHARSTRKKRCPYTKYQTLELEKEFLYNMYL 180 190 200 210 220 230 230 240 250 260 Hoxa9 TRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE ::::::::::.:.::::::::::::::::::: :.. . :. gi|119 TRDRRYEVARILSLTERQVKIWFQNRRMKMKKQNRERSGKEHI 240 250 260 270 >>gi|115502399|sp|Q9PWM6|HXD9A_BRARE Homeobox protein Ho (262 aa) initn: 565 init1: 440 opt: 679 Z-score: 740.6 bits: 144.7 E(): 4.5e-34 Smith-Waterman score: 679; 44.2% identity (70.4% similar) in 274 aa overlap (1-268:1-261) 10 20 30 40 50 60 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPV ::::..:.:::::... :.:.. :: .: :: :. . .......:.: : : gi|115 MSTSSALSSYYVDTIMGHEAEDVYGARYIQGSHTAPARPSGVV-ENADFSSCSFAPKSAV 10 20 30 40 50 70 80 90 100 110 Hoxa9 FGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRY-QSWLLEPMSGSLPMAGL-PT : ::: : ..::..:: : : : . .:.:: .::. ::... . ..:. :. gi|115 FPASWSSVHQPSTAAVSGIYHP-YVH-QTHL---SDNRYVRSWI-EPVANHISLTGFHPN 60 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 THHYGIKPEGLGT-RADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAE ..: : : :.: :...: ..: . ... ..:. .. . :. .. :: . gi|115 SRHSGTKTESLPPKRTESAAFETETPSV-PEFSLNAVSESADKATEERVGSDNSSHGEPK 120 130 140 150 160 170 180 190 200 210 220 230 Hoxa9 E---KPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYE . . :::: ::..::.:: .::::::::::.: ::::::::.: ::::::::: gi|115 DEKQQQQLDPS-----NPAANWIHARSTRKKRCPYTKYQTLELEKEFLYNMYLTRDRRYE 180 190 200 210 220 240 250 260 Hoxa9 VARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::.:::::::::::::::::::::.:.. . :: gi|115 VARILNLTERQVKIWFQNRRMKMKKMNRERSSKDP 230 240 250 260 >>gi|2495322|sp|Q98924|HXA9_CHICK Homeobox protein Hox-A (169 aa) initn: 660 init1: 479 opt: 674 Z-score: 737.9 bits: 143.6 E(): 6.3e-34 Smith-Waterman score: 674; 64.6% identity (76.8% similar) in 181 aa overlap (96-269:1-169) 70 80 90 100 110 120 Hoxa9 SHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRY-QSWLLEPMSGSLPMAGLPTTHHYGI :::: .::: ::. ::: . ::::..:::: gi|249 DGRYMRSWL-EPVPGSLSFPGLPTSRHYGI 10 20 130 140 150 160 170 Hoxa9 KPEGLGTR-ADGALPGSHTALLLSDYANGTVATASPVEKDTLS--GQAGDVSGEAE---E ::: :..: .: . .:: : ::: :. ::..: : : .. .::.: : gi|249 KPEPLAARRGDCTTFDTHT-LSLSDLPCGS----PPVDRDKQSHEGAFSENNGESEANGE 30 40 50 60 70 80 180 190 200 210 220 230 Hoxa9 KPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARL :: .:: :::..::::: .:::::::::::: :::::::::: ::::::::::::: gi|249 KPHIDP-----NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARL 90 100 110 120 130 240 250 260 Hoxa9 LNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::::::::::::::::::::.::: : ::: gi|249 LNLTERQVKIWFQNRRMKMKKINKDRA-KDE 140 150 160 >>gi|21263749|sp|Q9PVQ9|HXC9_ORYLA Homeobox protein Hox- (262 aa) initn: 726 init1: 446 opt: 675 Z-score: 736.3 bits: 143.9 E(): 7.8e-34 Smith-Waterman score: 765; 50.0% identity (68.8% similar) in 282 aa overlap (1-269:1-262) 10 20 30 40 50 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHA--RQSASISDHSELGTCTFPSKP :::.: .:.::::::: :: .. . :.:: . : : .. . . .. .:.: :: gi|212 MSTTGPITNYYVDSLINHESGDVIAAARFSAPGSHPAGPRPTSLVPECGDYPSCSFAPKP 10 20 30 40 50 60 60 70 80 90 100 110 Hoxa9 PVFGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRY-QSWLLEPMSGSLPMAGLP :::. ::. : .: ::: .: :.: : .::.:: .::: ::.::..:. : : gi|212 PVFSSSWAPVHSQ-----SSVVYHPYSHQ--P-HLSTDSRYMRSWL-EPISGAVPFHGYP 70 80 90 100 110 120 130 140 150 160 Hoxa9 TT-HHYGIKPEGLGTRADGALPGS----HTALLL---SDYANGTVATASPVEKDTLSGQA . .:::.::... . : :. .: : .:. . : .: :.. :. gi|212 GNGRHYGLKPDAFPDHRAGECLGTNGRTYTDYLYCSSTDMRDKTQQNAPSPESELLT--- 120 130 140 150 160 170 180 190 200 210 220 Hoxa9 GDVSGE-AEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLT ::. :::: ::: ::::.::.:: .::::::::::.: :::::::::: ::: gi|212 ---SGKHKEEKPELDP-----NNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLT 170 180 190 200 210 220 230 240 250 260 Hoxa9 RDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKD-GAPKDE :::::::::.:::::::::::::::::::::.::. : ::. gi|212 RDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKGDSKDQ 230 240 250 260 >>gi|110282971|sp|Q9YGT5|HXA9B_BRARE Homeobox protein Ho (258 aa) initn: 710 init1: 502 opt: 650 Z-score: 709.4 bits: 138.9 E(): 2.4e-32 Smith-Waterman score: 803; 53.2% identity (69.9% similar) in 269 aa overlap (1-268:1-257) 10 20 30 40 50 60 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPV ::: ::: :::.:: : :... .::. ::: .:. . .. ..:: :: .: . gi|110 MSTLGTL-SYYADSHIPHENDDHLAPRFSSGPVVQQQSRELTLLEYSEQEPYTFQAKSSI 10 20 30 40 50 70 80 90 100 110 Hoxa9 FGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDG-RYQSWLLEPMSGSLPMAGLPTT :: ::: :.: : .: .:: . :: . .:.:: . : :::. .::..:: : gi|110 FGASWS--PVQ-PTGASIAYHPYIHHPCST--GDSDGASVRPWALEPLP-ALPFTGLSTD 60 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 HHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEK : :: : : .. . .:: ::... :.:. : : :..:. . : . :: : gi|110 THQDIKLEPLVGSGECT---THT-LLVAETDNNTTQTERKVPDDAVSNGSHDEKIPAETK 120 130 140 150 160 180 190 200 210 220 230 Hoxa9 PGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLL ::::: :.:: ::::::..:::::::::::: :::::::::: ::.::::::::::: gi|110 LDLDPSKCNQDNPSSNWLHAKSTRKKRCPYTKHQTLELEKEFLFNMYLSRDRRYEVARLL 170 180 190 200 210 220 240 250 260 Hoxa9 NLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::::::::::::::::::: ::: ::: gi|110 NLTERQVKIWFQNRRMKMKKCNKD-RPKDI 230 240 250 >>gi|400010|sp|P09633|HXC9_MOUSE Homeobox protein Hox-C9 (260 aa) initn: 748 init1: 446 opt: 624 Z-score: 681.3 bits: 133.7 E(): 9e-31 Smith-Waterman score: 800; 50.5% identity (70.5% similar) in 275 aa overlap (1-269:1-259) 10 20 30 40 50 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYP-SGPGLQHARQSASISDHSELGTCTFPSKPP ::..: ...::::::: ..:.: . :.: .: :: :. . : :.. .:.: :: gi|400 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA 10 20 30 40 50 60 60 70 80 90 100 110 Hoxa9 VFGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRYQSWLLEPMSGSLPMAGLPTT ::. ::. ::.: ::: .: :: :: .:::: ::. :::.::.. . ..:. gi|400 VFSTSWAPVPSQ-----SSVVYHPYG-PQPHLGADT--RYMRTWLEPLSGAVSFPSFPAG 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 -HHYGIKPEGL-GTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDV---SG .::..::.. : ::: . ::. . :: :. . .:: . .:. : gi|400 GRHYALKPDAYPGRRADCG-PGDGRSY--PDYMYGSPGELRDRAPQTLPSPEADALAGSK 120 130 140 150 160 180 190 200 210 220 230 Hoxa9 EAEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYE . ::: :::: :::.::.:: .::::::::::.: :::::::::: ::::::::: gi|400 HKEEKADLDPS-----NPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYE 170 180 190 200 210 220 240 250 260 Hoxa9 VARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::.:::::::::::::::::::::.::. . :.. gi|400 VARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS 230 240 250 260 >>gi|20141537|sp|P31274|HXC9_HUMAN Homeobox protein Hox- (260 aa) initn: 748 init1: 446 opt: 623 Z-score: 680.2 bits: 133.5 E(): 1e-30 Smith-Waterman score: 799; 50.5% identity (70.2% similar) in 275 aa overlap (1-269:1-259) 10 20 30 40 50 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYP-SGPGLQHARQSASISDHSELGTCTFPSKPP ::..: ...::::::: ..:.: . :.: .: :: :. . : :.. .:.: :: gi|201 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA 10 20 30 40 50 60 60 70 80 90 100 110 Hoxa9 VFGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRYQSWLLEPMSGSLPMAGLPTT ::. ::. ::.: ::: .: :: :: .:::: ::. :::.::.. . ..:. gi|201 VFSTSWAPVPSQ-----SSVVYHPYG-PQPHLGADT--RYMRTWLEPLSGAVSFPSFPAG 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 -HHYGIKPEGL-GTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDV---SG .::..::.. : ::: . :: . :: :. . .:: . .:. : gi|201 GRHYALKPDAYPGRRADCG-PGEGRSY--PDYMYGSPGELRDRAPQTLPSPEADALAGSK 120 130 140 150 160 180 190 200 210 220 230 Hoxa9 EAEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYE . ::: :::: :::.::.:: .::::::::::.: :::::::::: ::::::::: gi|201 HKEEKADLDPS-----NPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYE 170 180 190 200 210 220 240 250 260 Hoxa9 VARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::.:::::::::::::::::::::.::. . :.. gi|201 VARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS 230 240 250 260 >>gi|18266775|sp|O42502|HXC9A_FUGRU Homeobox protein Hox (261 aa) initn: 683 init1: 442 opt: 597 Z-score: 652.2 bits: 128.4 E(): 3.8e-29 Smith-Waterman score: 739; 49.6% identity (70.7% similar) in 276 aa overlap (1-269:1-260) 10 20 30 40 50 Hoxa9 MSTSGTLTSYYVDSLILPESEE-LSVPRYPSGPGLQHA--RQSASISDHSELGTCTFPSK :::.: .:.::::::: :.:. :.. :. :. : . : : .. . . ... .:.: : gi|182 MSTTGPITNYYVDSLINHENEDVLAAARF-SAQGSHPAGPRTTSLVPECADFPSCSFAPK 10 20 30 40 50 60 70 80 90 100 110 Hoxa9 PPVFGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRY-QSWLLEPMSGSLPMAGL :::. ::. . .: : :: .: :.: : : ::.:: .::: ::.::..:. : gi|182 APVFSTSWAPMHTQ-P----SVGYHPYSHQ--PHLA-TDSRYMRSWL-EPISGAVPFHGY 60 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 PTT-HHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDV-SG : . .:::.::... . : :: :. .:: :. . .... : . : :: gi|182 PGNGRHYGLKPDAFQEHRAGDCLGS-TGRTYADYLYCTADIRDKTHQNIPSPEPELVASG 120 130 140 150 160 180 190 200 210 220 230 Hoxa9 E-AEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRY . .::: ::: ::::.::.:: .::::::::::.: :::::::::: :::::::. gi|182 KHKDEKPELDP-----NNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRF 170 180 190 200 210 220 240 250 260 Hoxa9 EVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE ::::.:::::::::::::::::::::.::. . : gi|182 EVARVLNLTERQVKIWFQNRRMKMKKMNKEKNDSKEQ 230 240 250 260 >>gi|119370775|sp|Q1KKZ3|HXA9B_FUGRU Homeobox protein Ho (249 aa) initn: 590 init1: 454 opt: 579 Z-score: 633.1 bits: 124.7 E(): 4.4e-28 Smith-Waterman score: 714; 49.8% identity (70.0% similar) in 267 aa overlap (1-263:1-244) 10 20 30 40 50 60 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPV ::: :: :::... .: :..:.. :::::. :... . ..... .: . .: . gi|119 MSTLGT--SYYAEASVLSEQDEIA-PRYPSAAGVEQ----TMLTEYGGHESCPLQGKSTL 10 20 30 40 50 70 80 90 100 110 Hoxa9 FGPSWSHVPAQFPGTVSSVY-HHHYGHPQGPVGADTDGRY-QSWLLEPMSGSLPMAGLPT :. ::: . .. :. . .: :::: ...:.:: . .:: :.: .:: ..:::. gi|119 FAGSWSPITTHPPNPGAPTYIHHHY------TSGDSDGMFTRSWALDP--ASLCLTGLPS 60 70 80 90 100 120 130 140 150 160 170 Hoxa9 -THHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEK-DTLSGQAGDVSGEA : :: :::: : :. . .:: :: :: .: .. . : :. .: .. :: . : gi|119 ATMHYEIKPEPLIGSAECTPLETHTPLL-SDIGNDATIAKIPCESTSTDKALKGDKT--A 110 120 130 140 150 160 180 190 200 210 220 230 Hoxa9 EEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVA :: : ::: ::::::. ::::::::::::::::::::::: :: :::::::: gi|119 EETRERD-----ANNPSSNWLHAKPTRKKRCPYTKHQILELEKEFLFNMYLPRDRRYEVA 170 180 190 200 210 240 250 260 Hoxa9 RLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::.::::::::::::::::::: ::: gi|119 RLLHLTERQVKIWFQNRRMKMKKENKDRRRDS 220 230 240 >>gi|114152823|sp|Q9YGS6|HXC9A_BRARE Homeobox protein Ho (260 aa) initn: 697 init1: 446 opt: 572 Z-score: 625.2 bits: 123.4 E(): 1.2e-27 Smith-Waterman score: 738; 47.1% identity (69.0% similar) in 274 aa overlap (1-269:1-259) 10 20 30 40 50 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYP-SGPGLQHARQSASISDHSELGTCTFPSKPP ::..: ...::::::: :::.. . :. .:: . .: . . . .. .:.: ::: gi|114 MSATGPISNYYVDSLINHESEDVLASRFTATGPISSSSRPTPLVPECADYPSCSFAPKPP 10 20 30 40 50 60 60 70 80 90 100 110 Hoxa9 VFGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRY-QSWLLEPMSGSLPMAGLP- :: ::. : .: ::: .: : : : .: ::.:: .::: ::. :.. . : gi|114 VFTTSWAPVHSQ-----SSVVYHPYTH-QPHLG--TDSRYVRSWL-EPIPGTVSFPGYAG 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 TTHHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSG--E ...:::.::. . : ::. . .:: ... ...: : .. ..:. . gi|114 NSRHYGLKPDTFQDPRAGDCLGSN-GRTYTDYLYCSAVDIREKQQNTPSPETESLSSGKH 120 130 140 150 160 170 180 190 200 210 220 230 Hoxa9 AEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEV ..: ::: ::::.::.:: .::::::::::.: :::::::::: :::::::::: gi|114 KDDKAELDP-----NNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEV 180 190 200 210 220 240 250 260 Hoxa9 ARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE ::.:::::::::::::::::::::.::. . : gi|114 ARVLNLTERQVKIWFQNRRMKMKKMNKEKNDSKEQ 230 240 250 260 >>gi|1708346|sp|P50209|HXA9_AMBME Homeobox protein Hox-A (143 aa) initn: 507 init1: 465 opt: 562 Z-score: 618.1 bits: 121.2 E(): 3e-27 Smith-Waterman score: 563; 63.2% identity (76.8% similar) in 155 aa overlap (121-268:2-143) 100 110 120 130 140 Hoxa9 VGADTDGRYQSWLLEPMSGSLPMAGLPTTHHYGIKPEGL--GTRADG--ALPGSHTALLL ::::::: : ::: .. .::: : : gi|170 RHYGIKPEPLPPGTRRGDCTTFDSSHT-LSL 10 20 30 150 160 170 180 190 200 Hoxa9 SDYANGTVATASPVEKDTLSGQAGDVSGEAE---EKPGLDPSKSLQNNPVSNWLHASATR :::.. ::..:.. : .. .:.: .::..:: :::..::::: .:: gi|170 SDYGS------SPADKQSSEGAFPEAPAETEASGDKPAIDP-----NNPAANWLHARSTR 40 50 60 70 210 220 230 240 250 260 Hoxa9 KKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKD :::::::::: :::::::::: ::::::::::::::::::::::::::::::::::.::: gi|170 KKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 80 90 100 110 120 130 Hoxa9 GAPKDE ::. gi|170 -RPKE 140 >>gi|110282970|sp|Q9PWL6|HXA9A_BRARE Homeobox protein Ho (250 aa) initn: 860 init1: 489 opt: 535 Z-score: 585.6 bits: 116.0 E(): 1.9e-25 Smith-Waterman score: 890; 55.8% identity (71.4% similar) in 269 aa overlap (1-268:1-250) 10 20 30 40 50 60 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPV :::::.::.:::::...: ::: :. :: :: . : . .: :.:: ::::.: :: gi|110 MSTSGALTGYYVDSIVIPGSEET---RFSSGLGLIQHRPTILPADLSDLGPCTFPAKQPV 10 20 30 40 50 70 80 90 100 110 Hoxa9 FGPS-WSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRYQSWLLEPMSGSLPMAGLPTT .: : :.:.:..: : :::. : : :: .: :::::. : ::.. ::. gi|110 YGTSDWGHIPTHFSTGVPSVYQPH---AQPPVVGD---YVQSWLLDSACG-LPQTEPPTV 60 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 HHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEK .: : . : ::. . :: : ..:: .: . .:.. . ..::. : : gi|110 NHNHAKSDTNETNDDGTEYSPHTILQPEVFTNGGCSTKTEAESSRTAEKSGDIEG----K 120 130 140 150 160 180 190 200 210 220 230 Hoxa9 PGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLL :: :: .::::::::::.:::::::::::::::::::::::::::::::::::::: gi|110 PGADP-----ENPVSNWLHASSTRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLL 170 180 190 200 210 220 240 250 260 Hoxa9 NLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::::::::::::::::::::::. . .: gi|110 NLTERQVKIWFQNRRMKMKKFNKNETKED 230 240 250 >>gi|1708347|sp|P51783|HXA9_CAVPO Homeobox protein Hox-A (162 aa) initn: 490 init1: 466 opt: 491 Z-score: 540.8 bits: 107.1 E(): 6e-23 Smith-Waterman score: 491; 78.8% identity (84.8% similar) in 99 aa overlap (171-269:73-162) 150 160 170 180 190 200 Hoxa9 HTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEKPGLDPSKSLQNNPVSNWLHAS : ::. :: .:: :::..::::: gi|170 LPLGSDSEMCQVDREKQPNEGAFSENNAENDSSGD---KPPIDP-----NNPAANWLHAR 50 60 70 80 90 210 220 230 240 250 260 Hoxa9 ATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKF .:::::::::::: :::::::::: ::::::::::::::::::::::::::::::::::. gi|170 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 100 110 120 130 140 150 Hoxa9 NKDGAPKDE ::: : ::: gi|170 NKDRA-KDE 160 >>gi|2495326|sp|Q28601|HXC9_SHEEP Homeobox protein Hox-C (96 aa) initn: 482 init1: 446 opt: 472 Z-score: 523.5 bits: 103.1 E(): 5.6e-22 Smith-Waterman score: 472; 74.2% identity (85.6% similar) in 97 aa overlap (173-269:4-95) 150 160 170 180 190 200 Hoxa9 ALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEKPGLDPSKSLQNNPVSNWLHASAT : . ::: :::: :::.::.:: .: gi|249 LAGSKHKEEKADLDPS-----NPVANWIHARST 10 20 210 220 230 240 250 260 Hoxa9 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNK :::::::::.: :::::::::: ::::::::::::.:::::::::::::::::::::.:: gi|249 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNK 30 40 50 60 70 80 Hoxa9 DGAPKDE . . :.. gi|249 EKTDKEQS 90 >>gi|123287|sp|P28357|HXD9_MOUSE Homeobox protein Hox-D9 (339 aa) initn: 698 init1: 450 opt: 474 Z-score: 517.9 bits: 103.9 E(): 1.1e-21 Smith-Waterman score: 670; 40.4% identity (59.3% similar) in 344 aa overlap (1-269:1-339) 10 20 30 40 50 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRY-PSGPGLQHARQSASISDH-----SELGTCTF ::.::::..::::::: :..:. . :. : ::: : . :...: .:...:.: gi|123 MSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGTQG--RPAGVADGPAAATAEFASCSF 10 20 30 40 50 60 70 80 90 100 Hoxa9 PSKPPVFGPSWSHVPAQFPG--TVSSVYHHHYGHPQGPVGADTDGRY-QSWLLEPMSG-- : ::. ::: : :: :. :.:..:: . . : :..: ::: .::. ::. : gi|123 APKSSVFSASWSAVAAQPPAAATMSGLYHPYVSPP--PLAAAEPGRYVRSWM-EPLPGFP 60 70 80 90 100 110 110 120 130 140 150 Hoxa9 ------------------SLPMAGLPTT-HHYGIKPEGLGTRADGALPGSHTALLLSDYA .: : :.. .::::::: .. : .: : .. :. . gi|123 GGAGGGGGSGGGGGGGPGPVPSPGGPANGRHYGIKPETGAAPAPAAASTSSSSSTSSSSS 120 130 140 150 160 170 160 170 Hoxa9 N------------GTVATASPVE---KDTLSGQAGDVSG--------------------- . :. . : . .: .. .:. : gi|123 SKRTECSAARESQGSGGPEFPCNSFLRDKAAAATGNGPGVGIGTGPGAVGSSEPSACSDH 180 190 200 210 220 230 180 190 200 210 220 Hoxa9 --------EAEEKPGLDPSKSLQ-NNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNT : :..: :...:. :::..::.:: .::::::::::.: :::::::::: gi|123 PSPGCSLKEEEKQPPQPPQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNM 240 250 260 270 280 290 230 240 250 260 Hoxa9 YLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE ::::::::::::.:::::::::::::::::::::..:. :: . gi|123 YLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD 300 310 320 330 >>gi|400004|sp|P31272|HXB9_XENLA Homeobox protein Hox-B9 (232 aa) initn: 474 init1: 440 opt: 465 Z-score: 510.5 bits: 102.0 E(): 2.9e-21 Smith-Waterman score: 544; 40.7% identity (64.1% similar) in 270 aa overlap (1-268:1-232) 10 20 30 40 50 60 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPV :. :: ::.:.:.:.: :...: . .. . . . : :. :. .. .:.: .. gi|400 MAISGPLTNYFVQSIISPDTDETPAAKFSAQ--FPNPRAPAQ-SEPLDFPSCSFSASWNF 10 20 30 40 50 70 80 90 100 110 Hoxa9 FGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRY-QSWLLE-PMSGSLPMAGLPT . : : :. : ... ... : :.. .::: ..:: . : : :. : : gi|400 LTP---HPPVYQP-YIQQQQQQEEGAPSA------EGRYLRAWLDNGPSLKSEPLLG-PP 60 70 80 90 100 120 130 140 150 160 170 Hoxa9 THHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEE . : :. . : ::. .:. .:..: ::. :..: .: gi|400 GDKLG--PQHYTV----ASPGG---------------AAANTERSTHSGNFPDTKG-TEG 110 120 130 140 180 190 200 210 220 230 Hoxa9 KPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARL : . ... :::: .::::: ..:::::::.:.: ::::::: :: :::::::.::::: gi|400 TAG-ETDRTHQNNPSANWLHARSSRKKRCPYSKYQTLELEKEFKFNMYLTRDRRHEVARL 150 160 170 180 190 200 240 250 260 Hoxa9 LNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::.:::::::::::::::::.::: . :: gi|400 LNLSERQVKIWFQNRRMKMKKLNKDQS-KD 210 220 230 >>gi|110825727|sp|Q9PWM2|HXB9A_BRARE Homeobox protein Ho (249 aa) initn: 635 init1: 445 opt: 461 Z-score: 505.8 bits: 101.2 E(): 5.4e-21 Smith-Waterman score: 691; 47.1% identity (64.2% similar) in 274 aa overlap (1-268:1-249) 10 20 30 40 50 60 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPV :: ::::..:::::.: :.:. .. :. :. . ::: . ..: :. .:.: :::: gi|110 MSISGTLSNYYVDSIISHEGEDPNASRF-SNVQYSSARQPGP-GEHPEFPSCSFQPKPPV 10 20 30 40 50 70 80 90 100 110 Hoxa9 FGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRY-QSWL-----LEPMSGSLPMA :. ::: .. . . .::: . : :: .:: :: ..:: ::. :. . gi|110 FSSSWSPFSSHASNGLPAVYHPYI--PTQPV-PSTDTRYLRTWLDCAPRAEPLPGQGQVK 60 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 GLPTTHHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSG : : : :. : :.: .: :. : . : .:. :. gi|110 MEPLLGHLGEPPK---------LVGQHEYILESSTAREINSGHSAGFEDN-----KDICE 120 130 140 150 160 180 190 200 210 220 230 Hoxa9 EAEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYE .:.: : : ::.: .::::: ..:::::::::.: :::::::::: :::::::.: gi|110 GSEDKEGPD-----QNDPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHE 170 180 190 200 210 240 250 260 Hoxa9 VARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::::::::::::::::::::::::.::: ::. gi|110 VARLLNLTERQVKIWFQNRRMKMKKMNKD-QPKE 220 230 240 >>gi|123286|sp|P28356|HXD9_HUMAN Homeobox protein Hox-D9 (342 aa) initn: 687 init1: 447 opt: 455 Z-score: 497.4 bits: 100.1 E(): 1.6e-20 Smith-Waterman score: 636; 40.3% identity (58.8% similar) in 345 aa overlap (1-269:1-342) 10 20 30 40 50 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRY-PSGPGLQHARQSASISDH-----SELGTCTF ::.::::..::::::: :..:. . :. : ::: : . :...: .:...:.: gi|123 MSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQG--RPAGVADGPAATAAEFASCSF 10 20 30 40 50 60 70 80 90 100 110 Hoxa9 PSKPPVFGPSWSHVPAQFPGT--VSSVYHHHYGHPQGPVGADTDGRY-QSWLLEPMSGSL . ::. ::: ::.: :.. .:..:: . : ..:. ::: .::. ::. : gi|123 APRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWM-EPLPGFP 60 70 80 90 100 110 120 130 140 Hoxa9 PMAGL------------PTT--------HHYGIKPE--GLGTRADGALPGSHTALLLSDY :: :. .::::::: . . : .: : .. ::. gi|123 GGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSS 120 130 140 150 160 170 150 160 170 Hoxa9 ANGT---VATAS-----P-------VEKDTLSGQAGDVSG-------------------- .. : :: : : ... . .:..:. : gi|123 SKRTECSVARESQGSSGPEFSCNSFLQEKAAGGDGGNGPGAGIGAATGTGGSSEPSACSD 180 190 200 210 220 230 180 190 200 210 220 Hoxa9 --------EAEEKPGLDPSKSL--QNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFN . ::: .:... ::: .::.:: .::::::::::.: :::::::::: gi|123 HPIPGCSLKEEEKQHSQPQQQQLDPNNPEANWIHARSTRKKRCPYTKYQTLELEKEFLFN 240 250 260 270 280 290 230 240 250 260 Hoxa9 TYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE ::::::::::::.:::::::::::::::::::::..:. :: . gi|123 MYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD 300 310 320 330 340 >>gi|1708355|sp|P20615|HXB9_MOUSE Homeobox protein Hox-B (250 aa) initn: 637 init1: 427 opt: 447 Z-score: 490.7 bits: 98.4 E(): 3.7e-20 Smith-Waterman score: 684; 48.0% identity (65.4% similar) in 269 aa overlap (1-263:1-246) 10 20 30 40 50 60 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPV :: ::::.::::::.: :::. ..::: . :: . ..: .. .:.: : :: gi|170 MSISGTLSSYYVDSIISHESEDAPPAKFPSGQ-YANPRQPGH-AEHLDFPSCSFQPKAPV 10 20 30 40 50 70 80 90 100 110 Hoxa9 FGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRY-QSWLLEPMSGSLPMA-GLPT :: .:. . . :.. :::: : .::: .:.. :: ..:: :: : : . : gi|170 FGATWAPLSPHASGSLPSVYHP-YLQPQGAPAAES--RYLRTWL-EPA----PRAEAAPG 60 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 THHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVS----G . ..: : : :: :: .:. : : : .. .: :: . . gi|170 QGQAAVKAEPLL----GA-PGELLKQGTPEYSLETSAGREAVLSNQRAGY-GDNKICEGS 120 130 140 150 160 180 190 200 210 220 230 Hoxa9 EAEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYE : .:.:: :.:: .::::: ..:::::::::.: :::::::::: :::::::.: gi|170 EDKERPG-------QTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHE 170 180 190 200 210 240 250 260 Hoxa9 VARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::::::.:::::::::::::::::.::. gi|170 VARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE 220 230 240 250 >>gi|20141507|sp|P17482|HXB9_HUMAN Homeobox protein Hox- (250 aa) initn: 644 init1: 427 opt: 446 Z-score: 489.6 bits: 98.2 E(): 4.3e-20 Smith-Waterman score: 679; 47.7% identity (64.4% similar) in 264 aa overlap (1-263:1-246) 10 20 30 40 50 60 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPV :: ::::.::::::.: :::. ..::: .:: . ..: :. .:.: : :: gi|201 MSISGTLSSYYVDSIISHESEDAPPAKFPSGQ-YASSRQPGH-AEHLEFPSCSFQPKAPV 10 20 30 40 50 70 80 90 100 110 Hoxa9 FGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRY-QSWLLEPMSGSLPMAGLPTT :: ::. . . :.. :::: : .::: :.. :: ..:: :: . . : gi|201 FGASWAPLSPHASGSLPSVYHP-YIQPQGVPPAES--RYLRTWL-EPAPRG---EAAPGQ 60 70 80 90 100 110 120 130 140 150 160 170 Hoxa9 HHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEK . ..: : : :: :: .:. : : : .. : . . :. : gi|201 GQAAVKAEPLL----GA-PGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSE- 120 130 140 150 160 180 190 200 210 220 230 Hoxa9 PGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLL : . :.:: .::::: ..:::::::::.: :::::::::: :::::::.:::::: gi|201 ---DKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLL 170 180 190 200 210 220 240 250 260 Hoxa9 NLTERQVKIWFQNRRMKMKKFNKDGAPKDE ::.:::::::::::::::::.::. gi|201 NLSERQVKIWFQNRRMKMKKMNKEQGKE 230 240 250 >>gi|119370790|sp|Q1KKY2|HXB9A_FUGRU Homeobox protein Ho (255 aa) initn: 586 init1: 417 opt: 429 Z-score: 471.1 bits: 94.8 E(): 4.6e-19 Smith-Waterman score: 574; 43.1% identity (60.4% similar) in 283 aa overlap (1-268:1-255) 10 20 30 40 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVP-RYPS-------GPGLQHARQSASI----SDHSE :: ::::..:::::.: ::..:.. :.:: . . ..:: .. : : gi|119 MSISGTLSNYYVDSIISHESDDLTASTRFPSVQYSGSSSAAAANGRQPGGAVHAEHPHPE 10 20 30 40 50 60 50 60 70 80 90 100 Hoxa9 -LGTCTFPSKPPVFGPSWSHV-PAQFPGTVSSVYHHHYGHPQGPVGADTDGRY-QSWLLE .:.: :::::. ::: : . ... .::: . . : .::: :: .::: gi|119 PYPSCSFQPKPPVFSSSWSPFSPHHGASSLPAVYHPYLPAQHVP-SADT--RYLRSWLDC 70 80 90 100 110 110 120 130 140 150 160 Hoxa9 PMSGSLPMAGLPTTHHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTL :: . : : . ..:. :: . : .:.. .. : : . : gi|119 APRGSESVQG--HTGQVKLEPQ-LG-HLGGEIPAKLSGQHPHDNPR-TCWSRRP------ 120 130 140 150 160 170 180 190 200 210 220 Hoxa9 SGQAGDVSGEAEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNT . :. : ...: .::::: ..:::::::::.: :::::::::: gi|119 -------------RLGFHLLLSPSDDPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNM 170 180 190 200 210 230 240 250 260 Hoxa9 YLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::::::.:::: ::::::::::::::::::::: .:: ::: gi|119 YLTRDRRHEVARALNLTERQVKIWFQNRRMKMKKQSKD-QPKD 220 230 240 250 >>gi|13124743|sp|P31260|HXA10_HUMAN Homeobox protein Hox (393 aa) initn: 456 init1: 364 opt: 419 Z-score: 457.7 bits: 93.0 E(): 2.6e-18 Smith-Waterman score: 419; 42.0% identity (59.8% similar) in 219 aa overlap (54-263:174-380) 30 40 50 60 70 Hoxa9 SVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPP----VFGPSWSHVPAQFPG--TVS :: :: ..: : : ::. :: .: gi|131 QNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPPDGCALGTS-SGVPV--PGYFRLS 150 160 170 180 190 200 80 90 100 110 120 130 Hoxa9 SVYHHHYGHPQGPVGADTDGRYQSWLLEPMSGSLPMAG--LPTTHHYGIKPEGLGTRADG ..: :. .: ::. : :. .. : : :: . : . :: gi|131 QAYGTAKGYGSGGGGAQQLGAG------PFPAQPPGRGFDLPPALASGSADAARKERALD 210 220 230 240 250 140 150 160 170 180 190 Hoxa9 ALPGSHTALLLSDYANGTV-ATASPVEKDTLSGQAGDVSGEAEEKPGLDPSKSLQNNPVS . : : . ..: : :: . :: .. : . :: .: ::. .: .. gi|131 SPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKG-EN--AA 260 270 280 290 300 310 200 210 220 230 240 250 Hoxa9 NWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRR ::: :.. ::::::::::: :::::::::: ::::.:: :..: ..::.::::::::::: gi|131 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRR 320 330 340 350 360 370 260 Hoxa9 MKMKKFNKDGAPKDE ::.::.:.. gi|131 MKLKKMNRENRIRELTANFNFS 380 390 >>gi|114152819|sp|P31310|HXA10_MOUSE Homeobox protein Ho (399 aa) initn: 418 init1: 364 opt: 416 Z-score: 454.4 bits: 92.4 E(): 3.9e-18 Smith-Waterman score: 416; 40.6% identity (59.0% similar) in 217 aa overlap (54-263:181-386) 30 40 50 60 70 Hoxa9 SVPRYPSGPGLQHARQSASISDHSELGTCTFPSKPP----VFGPSWSHVPAQFPGTVSSV :: :: ..: : : ::. :: gi|114 AQNIKEESSYCLYDAADKCPKGSAAADLAPFPRGPPPDGCALGAS-SGVPV--PGYFR-- 160 170 180 190 200 80 90 100 110 120 130 Hoxa9 YHHHYGHPQGPVGADTDGRYQSWLLEPMSGSLPMAGL---PTTHHYGIKPEGLGTRADGA . :: .: :. : : : :. .. : :. :. . . : :.. gi|114 LSQAYGTAKG-FGSGGGGTQQ--LASPFPAQPPGRGFDPPPALASGSTEAAGKERVLDST 210 220 230 240 250 260 140 150 160 170 180 190 Hoxa9 LPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEKPGLDPSKSLQNNPVSNW : . . . . : :: . :: .. : . :: .: ::. .: ..:: gi|114 PPPTLVCTGGGGSQGDEEAHASSSAAEELSPAPSENSKASPEKDSLGSSKG-EN--AANW 270 280 290 300 310 200 210 220 230 240 250 Hoxa9 LHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMK : :.. ::::::::::: :::::::::: ::::.:: :..: ..::.::::::::::::: gi|114 LTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMK 320 330 340 350 360 370 260 Hoxa9 MKKFNKDGAPKDE .::.:.. gi|114 LKKMNRENRIRELTANFNFS 380 390 >>gi|119370802|sp|Q1KKR7|HXD9B_FUGRU Homeobox protein Ho (301 aa) initn: 425 init1: 399 opt: 410 Z-score: 449.6 bits: 91.1 E(): 7.2e-18 Smith-Waterman score: 437; 38.1% identity (59.8% similar) in 244 aa overlap (32-260:53-291) 10 20 30 40 50 60 Hoxa9 STSGTLTSYYVDSLILPESEELSVPRYPSGPGLQH-ARQSASISDHSELGTCTFPSKPPV : ..: . ...:.. : . . :.. gi|119 IPGGLQGSSVGCAKPVRGSEEEDGTTGSHIPDFSHLSNKQTSLNGFSAWTNTANPTSSS- 30 40 50 60 70 80 70 80 90 100 110 Hoxa9 FGPSWSHVPAQFPGTVSSVYHHHYGHPQGPV-------GADTDGRY-QSWLLEPMSGSLP .:. .:..: .:: : :: . .: ...:. .:: : . . gi|119 -SPQLHSTPSHFQTHHFLSHHHPYYGPQTQTHTEHVASSAASESRFVRSWEGAP-APEVN 90 100 110 120 130 120 130 140 150 160 Hoxa9 MAGLPTTHHYGIKPE-GLGT-RA--DGALPGSHTALLLSDYANGTVATASPVEKDTLSGQ .. . . . :. :: . : : . : . : : :... . : . : : gi|119 LSHVSEEFQACVPPQTGLPSPRQTFDDVKPENSPAPHDSP-ADSSFDRPTEVVLERL-GA 140 150 160 170 180 190 170 180 190 200 210 220 Hoxa9 AGDVSGEAEEKPGLDPSKSLQN--NPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTY : . . . :.: . :. : :: .:.::..:::::::::::: ::::::::.: : gi|119 AEEPKKKPERKKDGEERKTQTNAENPSVSWIHAKSTRKKRCPYTKHQTLELEKEFLYNMY 200 210 220 230 240 250 230 240 250 260 Hoxa9 LTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::::: ::: ::::::::::::::::::::::. gi|119 LTRDRRLEVAGLLNLTERQVKIWFQNRRMKMKKLMMRDRRSVNQ 260 270 280 290 300 >>gi|119370777|sp|Q1KKZ4|HXAAB_FUGRU Homeobox protein Ho (331 aa) initn: 384 init1: 357 opt: 402 Z-score: 440.4 bits: 89.5 E(): 2.3e-17 Smith-Waterman score: 406; 39.5% identity (61.5% similar) in 205 aa overlap (84-263:114-318) 60 70 80 90 100 110 Hoxa9 FPSKPPVFGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRYQSWLLEPMSGSLPM : . : :: .: : :.....:. gi|119 RPCRVDQPRGQHMAQCSFSPNIKEESTYCLYESDKCPKGATVDDISYSASSCPVTSTFPV 90 100 110 120 130 140 120 130 140 150 Hoxa9 AGL--------PTTHHYGIKPEGLG-TRADGALPGSHTALLLSDYA----------NGTV : . :.. .:. : ..: : :... . : . . gi|119 PGYFRLSQTYASSRHYHDAHPNTDHFTLQQSARPDSRSSHRQAASAEPEQRANREESPVC 150 160 170 180 190 200 160 170 180 190 200 Hoxa9 ATASPV-EKDTLSGQAGDVSGEAEEKPGLD-PSKSLQ----NNPVSNWLHASATRKKRCP : :: :.:. .. :. : : : :.:. : :: . :. ..::: :.. :::::: gi|119 APCVPVREEDSRLSSEGSSSPEPAETPSLECPEKSGKGDGKNETAANWLTAKSGRKKRCP 210 220 230 240 250 260 210 220 230 240 250 260 Hoxa9 YTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKD ::::: :::::::::: ::::.:: :..: ..::.:::::::::::::.::.... gi|119 YTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMTRENRIRE 270 280 290 300 310 320 Hoxa9 E gi|119 LSNSFSFS 330 >>gi|119370803|sp|Q1KKT0|HXDAA_FUGRU Homeobox protein Ho (336 aa) initn: 391 init1: 364 opt: 402 Z-score: 440.3 bits: 89.5 E(): 2.4e-17 Smith-Waterman score: 403; 39.9% identity (57.7% similar) in 213 aa overlap (55-263:135-323) 30 40 50 60 70 80 Hoxa9 VPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPVFGPSWSHVPAQFPGTVSSVYHHHY : . :: :: ..:. :: . gi|119 IKEESNCCMYSDKRVPKVSSSEVPVYSNVAPESCPVDGP---EIPV--PGYFRLSQTYAT 110 120 130 140 150 90 100 110 120 130 140 Hoxa9 GHPQGPVGADTDGRYQSWL-LEPMSGSLPMAGL---PTTHHYGIKPEGLGTRADGALPGS :. : : : . . . : : : .. ... . :: .:. . . gi|119 GKHQEPYCHDPPDQSPTLIQLTPKPQPAPASATFADGESEKNKVPPEPATSRTPIQVESP 160 170 180 190 200 210 150 160 170 180 190 200 Hoxa9 HTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEKPGLDPSKSLQNNPVSNWLHAS ..: ::: : .:. : : .: : : ::: : :..::: :. gi|119 KSA---------------TVEK-ICSPEASASSPELLQKEGKD-SKSDQ--PANNWLTAK 220 230 240 250 260 210 220 230 240 250 260 Hoxa9 ATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKF . ::::::::::: :::::::::: ::::.:: :..: .:::.:::::::::::::.::. gi|119 SGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVNLTDRQVKIWFQNRRMKLKKM 270 280 290 300 310 320 Hoxa9 NKDGAPKDE ... gi|119 SRENRIRELTSNLTFS 330 >>gi|20141612|sp|Q9NYD6|HXC10_HUMAN Homeobox protein Hox (342 aa) initn: 369 init1: 369 opt: 397 Z-score: 434.8 bits: 88.5 E(): 4.8e-17 Smith-Waterman score: 397; 55.7% identity (81.1% similar) in 106 aa overlap (158-263:226-329) 130 140 150 160 170 180 Hoxa9 GLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEKPGLDPSKS :: :.. ..:.: : .. .. . . :. gi|201 VSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSPDTSDNEAKEEIKA 200 210 220 230 240 250 190 200 210 220 230 240 Hoxa9 LQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVK .: ..::: :.. ::::::::::: :::::::::: ::::.:: :... .:::.:::: gi|201 --ENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVK 260 270 280 290 300 310 250 260 Hoxa9 IWFQNRRMKMKKFNKDGAPKDE :::::::::.::.:.. gi|201 IWFQNRRMKLKKMNRENRIRELTSNFNFT 320 330 340 >>gi|400011|sp|P31257|HXC10_MOUSE Homeobox protein Hox-C (342 aa) initn: 369 init1: 369 opt: 397 Z-score: 434.8 bits: 88.5 E(): 4.8e-17 Smith-Waterman score: 397; 55.1% identity (81.3% similar) in 107 aa overlap (157-263:225-329) 130 140 150 160 170 180 Hoxa9 EGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEKPGLDPSK ::: :.. ....: : .. .. . . : gi|400 KVSFPETPKSDSQTPSPNEIKTEQSLAGPKASPSESEKERAKTADSSPDTSDNEAKEEIK 200 210 220 230 240 250 190 200 210 220 230 240 Hoxa9 SLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQV . .: ..::: :.. ::::::::::: :::::::::: ::::.:: :... .:::.::: gi|400 A--ENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQV 260 270 280 290 300 310 250 260 Hoxa9 KIWFQNRRMKMKKFNKDGAPKDE ::::::::::.::.:.. gi|400 KIWFQNRRMKLKKMNRENRIRELTSNFNFT 320 330 340 >>gi|123289|sp|P28358|HXD10_HUMAN Homeobox protein Hox-D (340 aa) initn: 439 init1: 365 opt: 396 Z-score: 433.8 bits: 88.3 E(): 5.5e-17 Smith-Waterman score: 396; 58.1% identity (82.9% similar) in 105 aa overlap (159-263:226-327) 130 140 150 160 170 180 Hoxa9 LGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEKPGLDPSKSL : :.. :. ... : :..:: . . :: gi|123 QMEKKMNEPVSGQEPTKVSQVESPEAKGGLPEERSCLA-EVSVSSPEVQEKESKEEIKS- 200 210 220 230 240 250 190 200 210 220 230 240 Hoxa9 QNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKI ..:.:::: :.. ::::::::::: :::::::::: ::::.:: :... .:::.::::: gi|123 -DTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKI 260 270 280 290 300 310 250 260 Hoxa9 WFQNRRMKMKKFNKDGAPKDE ::::::::.::.... gi|123 WFQNRRMKLKKMSRENRIRELTANLTFS 320 330 340 >>gi|114152824|sp|P28359|HXD10_MOUSE Homeobox protein Ho (340 aa) initn: 411 init1: 365 opt: 395 Z-score: 432.7 bits: 88.1 E(): 6.3e-17 Smith-Waterman score: 399; 38.6% identity (64.3% similar) in 210 aa overlap (55-263:136-327) 30 40 50 60 70 80 Hoxa9 VPRYPSGPGLQHARQSASISDHSELGTCTFPSKPPVFGPSWSHVPAQFPGTVSSVYHHHY : . :: .: .::. :: . gi|114 NIKEESNCCMYSDKRNKLISAEVPSYQRLVPESCPVENP---EVPV--PGYFRLSQTYAT 110 120 130 140 150 160 90 100 110 120 130 140 Hoxa9 GHPQGPVGADTDGRYQSWL-LEPMSGSLPMAGLPTTHHYGIKPEGLGTRADGALPGSHTA :. : . . .: : :.: ... :. . . . .. :.: : .... gi|114 GKTQ-EYNNSPEGSSTVMLQLNPRGAAKPQLSAAQLQM----EKKMNESASGQEP-TKVS 170 180 190 200 210 150 160 170 180 190 200 Hoxa9 LLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEKPGLDPSKSLQNNPVSNWLHASATR . : :.: . : ... :. ... : :..:: . . :: ..:.:::: :.. : gi|114 QVESPEAKGGL----PEDRSCLA-EVSVSSPEVQEKESKEEIKS--DTPTSNWLTAKSGR 220 230 240 250 260 210 220 230 240 250 260 Hoxa9 KKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKD :::::::::: :::::::::: ::::.:: :... .:::.:::::::::::::.::.... gi|114 KKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRE 270 280 290 300 310 320 Hoxa9 GAPKDE gi|114 NRIRELTANLTFS 330 340 >>gi|14916587|sp|Q9IA14|HXD10_HETFR Homeobox protein Hox (336 aa) initn: 450 init1: 363 opt: 394 Z-score: 431.7 bits: 87.9 E(): 7.2e-17 Smith-Waterman score: 394; 35.4% identity (58.8% similar) in 243 aa overlap (29-263:92-323) 10 20 30 40 50 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSELGTCTFPS-K : : . ::....: : . : : gi|149 NHQNMSISVHPYLSQVDGWADPSRPCRIEQPVTPQMPTCSFPASVKEEST--CCMYNSDK 70 80 90 100 110 60 70 80 90 100 110 Hoxa9 PPVFGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRYQSWLLEPMSGSLPM--AG ..:. .:: .: :: . .:. :. : .. :. :: . :: gi|149 RAKLNPT--AIPA-YPRLVSE--NCSIENPEIPI----PGYFRLCQAYPLEKSLDYNYAG 120 130 140 150 160 170 120 130 140 150 160 170 Hoxa9 LPTTHHYGIKPEGLGTRAD-GALPGSHTALLLSDYANGT---VATASPVEKDTLSGQAGD ... . . :: .. . .. : . . . :. . . . :: : : .. gi|149 EISSNVMPQSNLGLISKLQVSSQPPMERKINEKPNAQESTKGIYVESPEPKPRLLEVSAT 180 190 200 210 220 230 180 190 200 210 220 230 Hoxa9 VSGEAEEKPGLD-PSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRD . : : . : .: ..:.:::: :.. :::::::::.: :::::::::: ::::. gi|149 AEGAATSSELSDNETKEEIKTPISNWLTAKSGRKKRCPYTKYQTLELEKEFLFNMYLTRE 240 250 260 270 280 290 240 250 260 Hoxa9 RRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :: :... .:::.:::::::::::::.::.:.. gi|149 RRLEISKSVNLTDRQVKIWFQNRRMKLKKMNRETRIRELTTNLTFS 300 310 320 330 >>gi|115502400|sp|Q90469|HXDAA_BRARE Homeobox protein Ho (343 aa) initn: 411 init1: 365 opt: 394 Z-score: 431.6 bits: 87.9 E(): 7.3e-17 Smith-Waterman score: 394; 53.0% identity (78.6% similar) in 117 aa overlap (147-263:206-319) 120 130 140 150 160 170 Hoxa9 PTTHHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEA :. :.. .: .:. . : .:. : : gi|115 MQLNRATPKAQSTPFVEVEKKLAHDRDTRSSSPAQSPEPKVSTLEEKNCSTEASVSSPEL 180 190 200 210 220 230 180 190 200 210 220 230 Hoxa9 EEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVA .. : ..: ...:.:::: :.. ::::::::::: :::::::::: ::::.:: :.. gi|115 PHREG---KESKNDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS 240 250 260 270 280 290 240 250 260 Hoxa9 RLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE . .:::.:::::::::::::.::.... gi|115 KSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTSNLNFFVSTQNKCKSKT 300 310 320 330 340 >>gi|14916604|sp|Q9PWD6|HXA10_MORSA Homeobox protein Hox (289 aa) initn: 384 init1: 353 opt: 388 Z-score: 426.2 bits: 86.7 E(): 1.5e-16 Smith-Waterman score: 396; 35.3% identity (57.8% similar) in 249 aa overlap (20-263:55-276) 10 20 30 40 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHARQSASISDHSEL .:.:. : . :: . .. ...: . gi|149 QVAPCSFPQNIKEESTYCLYEQPKCPKASTAEDLTYSRLTT-TGL--GSSTCTVTDGGGG 30 40 50 60 70 80 50 60 70 80 90 100 Hoxa9 GTCTFPSKPPVFGPSWSHVPAQ----FPGTVSSVYHHHYG-HPQGPVGADTDGRYQSWLL : : : : .:. .. : . : :.: :: .:. :... gi|149 GGGGSVPVPGYFRLSQTHAHSHKLYNTNGPQPNPSHSHFGLHPTAPA------RFHT--- 90 100 110 120 130 110 120 130 140 150 160 Hoxa9 EPMSGSLPMAGLPTTHHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDT : : : : .. . : . : ::.. : :: . :..:. .:. gi|149 PPTSTSTPATAQEGRNTEEPVSSGNADLQPHAAPGTEEARESSD---AEVSSADETEEHD 140 150 160 170 180 170 180 190 200 210 220 Hoxa9 LSGQAGDVSGEAEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFN :: ...:. .:: .: ..::: :.. ::::::::::: :::::::::: gi|149 KERQAKSTKGD---------TKS-EN--TANWLTAKSGRKKRCPYTKHQTLELEKEFLFN 190 200 210 220 230 230 240 250 260 Hoxa9 TYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE ::::.:: :... ..::.:::::::::::::.::.... gi|149 MYLTRERRLEISKSVHLTDRQVKIWFQNRRMKLKKMTRENRIRELTSNYGFS 240 250 260 270 280 >>gi|123321|sp|P10179|HMB4_TRIGR Homeobox protein HB4 (107 aa) initn: 380 init1: 380 opt: 381 Z-score: 424.7 bits: 85.0 E(): 1.8e-16 Smith-Waterman score: 381; 81.2% identity (89.9% similar) in 69 aa overlap (194-262:34-102) 170 180 190 200 210 220 Hoxa9 TLSGQAGDVSGEAEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLF .::: :.. ::::::::: : ::::::::: gi|123 FMKKNCKCISFFIFFSIFFCRGREAEERGHANWLSATSGRKKRCPYTKFQTLELEKEFLF 10 20 30 40 50 60 230 240 250 260 Hoxa9 NTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE : ::::::: :.::::.::::::::::::::::::: :. gi|123 NMYLTRDRRLEIARLLSLTERQVKIWFQNRRMKMKKQNRAQNYP 70 80 90 100 >>gi|14916599|sp|Q9IA27|HXA10_HETFR Homeobox protein Hox (271 aa) initn: 391 init1: 364 opt: 385 Z-score: 423.3 bits: 86.1 E(): 2.1e-16 Smith-Waterman score: 385; 46.8% identity (71.9% similar) in 139 aa overlap (126-263:127-258) 100 110 120 130 140 150 Hoxa9 DGRYQSWLLEPMSGSLPMAGLPTTHHYGIKPEGLGTR-ADGALPGSHTALLLSDYANGTV : :: . ..:. :: : . :.... gi|149 LYSNTGQVGASPFVPQSQIRFGTPPSSASTPTELGRKGSEGTSPGHLTCSSEREEAEAAA 100 110 120 130 140 150 160 170 180 190 200 210 Hoxa9 ATASPVEKDTLSGQAGDVSGEAEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQI ..:. :.. . .... : : : : .. . .::: :.. ::::::::::: gi|149 SSANE-ESSPVPSESNKNSPEKETK------GEVKAENGANWLTAKSGRKKRCPYTKHQT 160 170 180 190 200 220 230 240 250 260 Hoxa9 LELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::::::::: ::::.:: :..: ..::.:::::::::::::.::.:.. gi|149 LELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFS 210 220 230 240 250 260 gi|149 FS 270 >>gi|60392422|sp|Q9PWL7|HXBAA_BRARE Homeobox protein Hox (85 aa) initn: 365 init1: 365 opt: 378 Z-score: 422.8 bits: 84.3 E(): 2.2e-16 Smith-Waterman score: 378; 67.9% identity (88.5% similar) in 78 aa overlap (191-268:1-78) 170 180 190 200 210 220 Hoxa9 EKDTLSGQAGDVSGEAEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKE : ...:: :.: :::::::.:::::::::: gi|603 NAANGWLSAKAGRKKRCPYSKHQILELEKE 10 20 30 230 240 250 260 Hoxa9 FLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE :::: ::::.:: :..: .:::.:::::::::::::.::.... .: gi|603 FLFNMYLTRERRLEISRSINLTDRQVKIWFQNRRMKLKKMTREHRTRDPGTSFTV 40 50 60 70 80 >>gi|400019|sp|P24341|HXD10_CHICK Homeobox protein Hox-D (95 aa) initn: 365 init1: 365 opt: 377 Z-score: 421.1 bits: 84.1 E(): 2.8e-16 Smith-Waterman score: 377; 70.3% identity (91.9% similar) in 74 aa overlap (190-263:9-82) 160 170 180 190 200 210 Hoxa9 VEKDTLSGQAGDVSGEAEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEK ..:.:::: :.. ::::::::::: ::::: gi|400 FLIEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEK 10 20 30 220 230 240 250 260 Hoxa9 EFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE ::::: ::::.:: :... .:::.:::::::::::::.::.... gi|400 EFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS 40 50 60 70 80 90 >>gi|119370776|sp|Q1KL16|HXAAA_FUGRU Homeobox protein Ho (287 aa) initn: 407 init1: 353 opt: 378 Z-score: 415.4 bits: 84.7 E(): 5.8e-16 Smith-Waterman score: 385; 34.1% identity (58.1% similar) in 246 aa overlap (21-263:45-274) 10 20 30 40 Hoxa9 MSTSGTLTSYYVDSLILPESEELSVPRYPSGPGLQHAR-QSASISDHSEL :. . :. . : ..: :::... : gi|119 RMDQEHPVGSQVAPCSFTQNIKEESTYCLYEQPKCPKASTTEDLAYSRLTSASLGSTS-- 20 30 40 50 60 70 50 60 70 80 90 100 Hoxa9 GTCTFPSKPPVFGPSWSHVPAQFPGTVSSVYHHHYGHPQGPVGADTDGRYQSWLLEPMSG :: . : ::. : . . .. :. . .:: . .:. :.: . gi|119 --CTVTNGGSDGGS--VPVPGYFRLSQTHAHSHKLYNTNGPQPNPSPSRFG---LHPAAP 80 90 100 110 120 110 120 130 140 150 160 Hoxa9 SLPMAGLPTTHHYGIKPEGLGTRADGALPGSHTALLLSDYANGTVA-TASPV-EKDTLSG . . .: . : : : . :. .: : .: .: : : . : gi|119 ARFHTQTNSTPALAAAQERR-TTDDTGTSGN------ADQQPGHAAPVAEEVRECSEAEG 130 140 150 160 170 170 180 190 200 210 220 Hoxa9 QAGDVSGEAEEKPGLDPSKSLQNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYL ...: . : :.. . . . . ..::: :.. ::::::::::: :::::::::: :: gi|119 SSADEAEENEDRAATGTKGHSKPDNAGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYL 180 190 200 210 220 230 230 240 250 260 Hoxa9 TRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE ::.:: :... ..::.:::::::::::::.::.... gi|119 TRERRLEISKSVHLTDRQVKIWFQNRRMKLKKMTRENRIRELTSNYGFS 240 250 260 270 280 >>gi|60392410|sp|Q8AWY2|HXAAB_BRARE Homeobox protein Hox (330 aa) initn: 418 init1: 358 opt: 376 Z-score: 412.4 bits: 84.3 E(): 8.5e-16 Smith-Waterman score: 376; 50.4% identity (74.8% similar) in 119 aa overlap (153-263:202-317) 130 140 150 160 170 180 Hoxa9 GIKPEGLGTRADGALPGSHTALLLSDYANGTVATASPVEKDTLSGQAGDVSGEAEEKPGL : : .: .. : :..: .:. .: gi|603 HVVAQRSTRFDSSLSAIAAEASRDESDEPPTCAPCAPGRNKELRGSTGTASSP---EPPD 180 190 200 210 220 190 200 210 220 230 Hoxa9 DPSKSL--------QNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYE .: :.. ... ..::: :.. ::::::::::: :::::::::: ::::.:: : gi|603 SPEKAVTVTKAGDSKSESTANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLE 230 240 250 260 270 280 240 250 260 Hoxa9 VARLLNLTERQVKIWFQNRRMKMKKFNKDGAPKDE ..: ..::.:::::::::::::.::.... gi|603 ISRSVHLTDRQVKIWFQNRRMKLKKMSRENRIRELSANFSFS 290 300 310 320 330 >>gi|119370794|sp|Q1KKV1|HXCAA_FUGRU Homeobox protein Ho (346 aa) initn: 397 init1: 375 opt: 375 Z-score: 411.1 bit