LOCUS AAC24272 359 aa linear INV 19-NOV-2002 DEFINITION Hypothetical protein C17E7.6 [Caenorhabditis elegans]. ACCESSION AAC24272 VERSION AAC24272.1 GI:2315377 DBSOURCE accession AF016443.1 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (residues 1 to 359) AUTHORS Waterston,R. TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium JOURNAL Science 282 (5396), 2012-2018 (1998) MEDLINE 99069613 PUBMED 9851916 REFERENCE 2 (residues 1 to 359) AUTHORS Bradshaw,H. TITLE The sequence of C. elegans cosmid C17E7 JOURNAL Unpublished (2001) REFERENCE 3 (residues 1 to 359) AUTHORS Waterston,R. TITLE Direct Submission JOURNAL Submitted (30-JUL-1997) Department of Genetics, Washington University, 4444 Forest Park Avenue, St. Louis, Missouri 63108, USA REFERENCE 4 (residues 1 to 359) AUTHORS Waterston,R. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) Department of Genetics, Washington University, 4444 Forest Park Avenue, St. Louis, Missouri 63108, USA REFERENCE 5 (residues 1 to 359) AUTHORS Waterston,R. TITLE Direct Submission JOURNAL Submitted (28-JUN-2001) Department of Genetics, Washington University, Genome Sequencing Center, 4444 Forest Park Avenue, St. Louis, MO 63110, USA REFERENCE 6 (residues 1 to 359) AUTHORS Waterston,R. TITLE Direct Submission JOURNAL Submitted (11-JUL-2001) Department of Genetics, Washington University, Genome Sequencing Center, 4444 Forest Park Avenue, St. Louis, MO 63110, USA REFERENCE 7 (residues 1 to 359) AUTHORS Waterston,R. TITLE Direct Submission JOURNAL Submitted (17-MAY-2002) Department of Genetics, Washington University, Genome Sequencing Center, 4444 Forest Park Avenue, St. Louis, MO 63110, USA REFERENCE 8 (residues 1 to 359) AUTHORS Waterston,R. TITLE Direct Submission JOURNAL Submitted (16-NOV-2002) Department of Genetics, Washington University, Genome Sequencing Center, 4444 Forest Park Avenue, St. Louis, MO 63110, USA COMMENT Submitted by: Genome Sequencing Center Department of Genetics, Washington University St. Louis , MO 63110, USA, and Sanger Centre, Hinxton Hall Cambridge CB10 IRQ, England email: rw@nematode.wustl.edu and jes@sanger.ac.uk NOTICE: This sequence may not be the entire insert of this clone. It may be shorter because we only sequence overlapping sections once, or longer because we provide a small overlap between neighboring submissions. This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistry or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. For a graphical representation of this cosmid sequence and its analysis see: http://www.wormbase.org/db/seq/sequence?name=C17E7;class=Sequence NEIGHBORING COSMID INFORMATION The 5' cosmid is F47C10, 200 bp overlap; the 3' cosmid is T20C7, 200 bp overlap. Actual start of this cosmid is at base position 197 of C17E7; actual end is at 43254 of C17E7. NOTES: Coding seqences below are the result of integration and manual review of the following data : computer analysis using the program Genefinder (P. Green and L. Hillier, personal communication), the large scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html) and The C. elegans ORFeome cloning project (http://worfdb.dfci.harvard.edu/), similarity to other proteins from BlastX analyses (http://blast.wustl.edu/), sequence conservation with C. briggsae using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000), individual C. elegans GenBank submissions, and personal communications with C. elegans researchers. tRNAs are predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964). Method: conceptual translation. FEATURES Location/Qualifiers source 1..359 /organism="Caenorhabditis elegans" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="V" /clone="C17E7" Protein 1..359 /product="Hypothetical protein C17E7.6" CDS 1..359 /gene="C17E7.6" /standard_name="C17E7.6" /coded_by="complement(join(AF016443.1:7471..7721, AF016443.1:7800..8061,AF016443.1:8124..8234, AF016443.1:8901..9356))" /note="contains similarity to Pfam domains PF00105 (Zinc finger, C4 type (two domains)), PF00104 (Ligand-binding domain of nuclear hormone receptors)" /db_xref="WormBase:C17E7.6" ORIGIN 1 msvyhtpsps satssplsid ipqrkcvicl rpaysnnygv ltcdackmff rrivilkkdy 61 kckydgrcah vakspmvkck gcryqqclda gmsfqptfle ltnekdldis vtignlvfld 121 trksrimktq ftddnlsleq ivdtrrmkmk srtinkyisp qdwtflalyt tvdlllnldf 181 meklstpdkl illrhsaskc allggamrty ldkkdrmttv dgqdiypkem rallgfqqga 241 dqfldrvrsl lisklaeldv tteecilisa iifcdpavfy dqdnpnaqqi vsaqqqnfts 301 alsqycllmy hrngpsrltn llslcpiiqk nfedlqyltm vfrlavkgmk fkkieqeli //