Problem Sets

Perl Problems

• Problem 1 - Adding numbers, printing text
• Problem 2 - 'reverse' function and using hashes
• Problem 3 - Regular expressions
• Project 1 - parsing sequence data from files
• Project 2 - finding codon bias

Bioperl Problems

• Problem 4 - Using the Seq objects
• Problem 5 - Sequence File I/O
• Problem 6 - Sequence DB and Indexes
• Problem 7 - NCBI data access
• Problem 8 - Parsing/Running BLAST
• Problem 9 - Running/Parsing MSA
• Project 3 - building a local db of sequences from a blastdb

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